View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672-Insertion-7 (Length: 176)
Name: NF5672-Insertion-7
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 40749018 - 40749188
Alignment:
| Q |
8 |
agtcaaactttttcctt--gagaattaacaaataaattagttttgctatatannnnnnnncttccaaatgtgtactaaatttggattgaaatattacaga |
105 |
Q |
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| T |
40749018 |
agtcaaactttttccttttgataattaacaaataaattggttttgctatatattttttttcttccaaatgtgtactaaatttggattgaaatattacaga |
40749117 |
T |
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| Q |
106 |
tccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatat |
176 |
Q |
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| T |
40749118 |
tccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatat |
40749188 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 28496513 - 28496437
Alignment:
| Q |
100 |
tacagatccagatgctgaagtcattgctctttctcccaagactctaatggccacgaaccgattcgtctgcgaaatat |
176 |
Q |
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| T |
28496513 |
tacagatccagatgccgaggtcattgctctctcaccgaagacactcatggcaacaaacagattcatctgtgaaatat |
28496437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 42286842 - 42286889
Alignment:
| Q |
103 |
agatccagatgctgaagtcattgctctttctcccaagactctaatggc |
150 |
Q |
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| T |
42286842 |
agatccagatgcagaagtgatagcactatctcccaagactctaatggc |
42286889 |
T |
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