View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5672_high_10 (Length: 349)
Name: NF5672_high_10
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 48695612 - 48695269
Alignment:
| Q |
1 |
ttagacacttagcacataagtgattatgtatacgatattcctataacaaagtataatagaaacttaaactgttgtcatttaaactataagctgctgtcat |
100 |
Q |
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| T |
48695612 |
ttagacacttagcacataagtgattatgtatacgatattcctataacaaagtataatagaaacttaaactgttgtcatttaaactataagctgctgtcat |
48695513 |
T |
|
| Q |
101 |
aagctatcttagagaccttacaggaatatgttgaaaacaacttatgaacatctgatacgctgaaaacaacttataccaattgatacgtttaaataattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695512 |
aagctatcttagagaccttacaggaatatgttgaaaacaacttgtgaacatccgatacgctgaaaacaacttataccaattgatacgtttaaataattca |
48695413 |
T |
|
| Q |
201 |
atctaaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695412 |
atctaaacaggtcctaatatggattggaaacaaggacagatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaa |
48695313 |
T |
|
| Q |
301 |
atctccagatgacaacatgacatccaaaagctgtctctgctcct |
344 |
Q |
| |
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| T |
48695312 |
atctccagatgacaacatgacatccaaaagctgtctttgctcct |
48695269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 47319346 - 47319306
Alignment:
| Q |
80 |
taaactataagctgctgtcataagctatcttagagacctta |
120 |
Q |
| |
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| T |
47319346 |
taaactataagctgttgtcataatctatcttagagagctta |
47319306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 3455028 - 3455132
Alignment:
| Q |
238 |
agatttccaacctgattcaaccttggaaagatcaagtatgtcatttatgagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctc |
337 |
Q |
| |
|
||||||| ||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
3455028 |
agatttctaacctgactcgaccttggaaagatcaagtatatcatttataagttgaagaaccaaatctcctgaagataacatgacatccaaaagctgtctt |
3455127 |
T |
|
| Q |
338 |
tgctc |
342 |
Q |
| |
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||||| |
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| T |
3455128 |
tgctc |
3455132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 12975298 - 12975407
Alignment:
| Q |
36 |
tattcctataacaaagtataatagaaacttaaactgttgtcatttaaactataagctgctgtcataagctatcttagagaccttacaggaatatgttgaa |
135 |
Q |
| |
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|||||||||||||||| |||| | ||| | ||| |||| |||| ||| |||||||||| |||||||||||||| |||| |||| |||||| |||||| |
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| T |
12975298 |
tattcctataacaaagaataaaataaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagctta-tggaataagttgaa |
12975396 |
T |
|
| Q |
136 |
aacaacttatg |
146 |
Q |
| |
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||||||||||| |
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|
| T |
12975397 |
aacaacttatg |
12975407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 34035929 - 34035982
Alignment:
| Q |
97 |
tcataagctatcttagagaccttacaggaatatgttgaaaacaacttatgaaca |
150 |
Q |
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||||||||||||||||||| ||| | |||| ||||||||||||||||||||| |
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| T |
34035929 |
tcataagctatcttagagaacttgcgaaaataagttgaaaacaacttatgaaca |
34035982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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