View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_high_2 (Length: 749)
Name: NF5672_high_2
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 415 - 731
Target Start/End: Original strand, 47034892 - 47035206
Alignment:
| Q |
415 |
cattcacccactcattaatttagattaaggttcttcacattgctatttgaataatannnnnnnnnnnnnnnnnagttagagtcaaggtttgttaatcttc |
514 |
Q |
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| T |
47034892 |
cattcacccactcactaatttagattaaggttcttcacattgctatttgaataatatttttctttttctttttagttagagtcaaggtttgttaatcttc |
47034991 |
T |
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| Q |
515 |
aatccctctttgcattttgtagatttgttgtgatatatgagaggtaagcactttgaacccactttttggtgtttagttaacatgtgttttatggttttgt |
614 |
Q |
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| T |
47034992 |
aatccctcttttcattttgtagatttgttgtgatatatgagaggtaagcactttgaacccactttttggtgtttagttaacatgtgttttattgttttgt |
47035091 |
T |
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| Q |
615 |
tatttatttgttgaatgtgcgtactattctactgttctttataacaacaatattagttaaaacgtgttagctaaagaaattgggacatttcgaacaaccc |
714 |
Q |
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| T |
47035092 |
tatttatttgttgaatgtgcgtactattctactgttctttataacaaca--attagttaaaacgtgttagctaaagaaattgggacatttcgaacaaccc |
47035189 |
T |
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| Q |
715 |
tcgtacattatatcaac |
731 |
Q |
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| T |
47035190 |
tcgtacattatatcaac |
47035206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 117 - 385
Target Start/End: Original strand, 47034588 - 47034858
Alignment:
| Q |
117 |
aagttgaaatttataagttgtcttctaaatgaaccactttacacacgaatcttagaagttaaccatacacattaatcatccttaattaattaaaaaagtt |
216 |
Q |
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| T |
47034588 |
aagttgaaatttctaaattgtcttctaactgaaccactttacacacgaatcttagaagttaaccatacacattaatcatccttaattaattaaaaaagtt |
47034687 |
T |
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| Q |
217 |
agaataaagttcacatgcaacaattctgactgaggtgagtcataaacttccaactctagcatagattcaattacacgggataggtatgtcacactcccca |
316 |
Q |
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| T |
47034688 |
agaataaagttcacatgcaacaattctgactgaggtgagtcataaacttccaactctagcatagattcaattacacggaatagctatgtcacactcccga |
47034787 |
T |
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| Q |
317 |
gtgcataaaaacattaaagcgcgaaacatgtg-aaatcaaatataaccca-gatcattggtaatgttctga |
385 |
Q |
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| T |
47034788 |
gtgcataaaaacattaaagcgcgaaacatgtgaaaatcaaatataacccagggtcattggtaatgttctga |
47034858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 47016230 - 47016350
Alignment:
| Q |
1 |
ctaaaggtcatatgtgtgattcggtaaaatgttgtcactcctctaggtttccacacccattggtatcgttattaaagtgggaattttcactctcacatgt |
100 |
Q |
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| T |
47016230 |
ctaaagatcatatgtgtgattcggtaaaatgttgtcactcctctaggtttcaacacccattggtatcgttattaaagtggaaattttcactctcacatgt |
47016329 |
T |
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| Q |
101 |
aattgaaacaaggcagaagtt |
121 |
Q |
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| T |
47016330 |
aattgaaacaaggtagaagtt |
47016350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 25795833 - 25796007
Alignment:
| Q |
69 |
ttattaaagtgggaattttcactctcacatgtaattgaaacaaggcagaagttgaaatttataagttgtcttctaaatgaaccactttacacacgaatct |
168 |
Q |
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| T |
25795833 |
ttattaaagtggggacttacactctcacatgtaattgaaacgaggtaaatgttgaaattcttaaattgtcatctaaaagaaccacaatgcacaagaatct |
25795932 |
T |
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| Q |
169 |
tagaagttaaccatacacattaatcatccttaattaattaaaaaagttagaataaagttcacatgcaacaattct |
243 |
Q |
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| T |
25795933 |
tagaacctaaccacataccataatgatccctaataaattaaagacattagaataaaattcatatgtaacgattct |
25796007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 15073395 - 15073242
Alignment:
| Q |
88 |
cactctcacatgtaattgaaacaaggcagaagttgaaatttataagttgtcttctaaatgaaccactttacacacgaatcttagaagttaaccatacaca |
187 |
Q |
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| T |
15073395 |
cactctcacatgtaattgaaacgagaca-aagttcaaattcctaaattgtcatctaaagaaaccacaccgcacacaaatcttagaacttaaccatatatc |
15073297 |
T |
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| Q |
188 |
ttaatcat-ccttaattaattaaaaaagttagaataaagttcacatgcaacaatt |
241 |
Q |
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| T |
15073296 |
ctaatgatcccttaataaattaaagacattagaataaaattcatatgtaacaatt |
15073242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 16810764 - 16810848
Alignment:
| Q |
23 |
ggtaaaatgttgtcactcctctaggtttccacacccattggtatcgttattaaagtgggaattttcactctcacatgtaattgaa |
107 |
Q |
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| T |
16810764 |
ggtaaaaggtcgtgactcctctaggttccaacacactttggtattgttattaaagcggggacttaaactctcacatgtaattgaa |
16810848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 17043605 - 17043669
Alignment:
| Q |
89 |
actctcacatgtaattgaaacaaggcagaagttgaaatttataagttgtcttctaaatgaaccac |
153 |
Q |
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| T |
17043605 |
actcttacaggtaattgaaacaagacaaatgttaaaatttataaattgtcatctaaatgaaccac |
17043669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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