View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_low_1 (Length: 970)
Name: NF5672_low_1
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 831; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 831; E-Value: 0
Query Start/End: Original strand, 79 - 953
Target Start/End: Original strand, 40748149 - 40749022
Alignment:
| Q |
79 |
aaaggaaacgtgttacaactattggtactatatatgttattttcccatatactatatttgtttttggattagtttatttaaattgggtaaatttgattgt |
178 |
Q |
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| T |
40748149 |
aaaggaaacgtgttacaactattggtactatatatgttattttcccagatgctatatttgtttttggattagtttatttaaattgggtaaattttattgt |
40748248 |
T |
|
| Q |
179 |
tgatctattaaataaatctcacaattgtgttacatctctaaaagattcaagtccattatttatttctttataaacattctcctaattatgttaatctctt |
278 |
Q |
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| T |
40748249 |
tgatctattaaataaatctcacaattgtgttacatctctaaaagattcaagtccattatttatttctttataaacattctcctaattatgttaatctctt |
40748348 |
T |
|
| Q |
279 |
tttgcaatacaaaatgaaatatatctttttgtgagagtgagatcaataaaattaattacacttgaataagttgtttagtaaatgtaaagttagttttatt |
378 |
Q |
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| T |
40748349 |
tttgcaatacacaatgaaatatatctttttgtgagagtgagatcaataaaattaattacacttgaataagttgtttagtaaatgtaaagttagttttatt |
40748448 |
T |
|
| Q |
379 |
tatttataatgaatccatgggtcgtactcttttctcctgaaaatatatctatcgagtaaagactaaagagaccaggcatgtgaccaaggatagagatgag |
478 |
Q |
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| T |
40748449 |
tatttataatgaatccatgggtcgtactcttttctcctgaaaatatatctatcgagtaaagactaaagagaccaggcatgtgaccaaggatagagatgag |
40748548 |
T |
|
| Q |
479 |
gttaaaagctgacatattatattctctactttattataagaacttttggttttatctttcacatatatgcaagtgaaatcaatagaaagcaaaccagatc |
578 |
Q |
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| T |
40748549 |
gttaaaagctgacatattatattctctactttattataagaacttttggttttatctttcacatata-gcaagtgaaatcaatagaaagcaaaccagatc |
40748647 |
T |
|
| Q |
579 |
accactccagctataacaattagctcatgcacaacctcataaactatatggctactttttcttgtcttttaacagaataatcacttatctcttacagcat |
678 |
Q |
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| T |
40748648 |
accactccagctataacaattagctcatgcacaacctcataaactatatggctactttttcttgtcttttaacagaataatcacttatctcttacagcat |
40748747 |
T |
|
| Q |
679 |
ttaggtaccctccaaaagaatttttgttgatttcttagctttagttttgttactccaataaacctttgttctcttccttgtactttgtgaaaacctttga |
778 |
Q |
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| T |
40748748 |
ttaggtaccctccaaaagaatttttgttgatttcttagctttagttgtgttactccaataaacctttgttttcttccttgtactttgtgaaaacctttga |
40748847 |
T |
|
| Q |
779 |
aatttagctgttttaatttcttctgctcacaaatgaatattcttggtgaccccttttcactatcctcttccaccggaggttttgacaaacttcaaaacac |
878 |
Q |
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| T |
40748848 |
aatttagctgttttaatttcttctgctcacaaatgaatattcttggtgaccccttttcaccatcctcttccaccggaggttttgacaaacttcaaaacac |
40748947 |
T |
|
| Q |
879 |
aaaccctaaccctaaaccaccacaaaccaacaagaagaagagaaatctaccaggaacaccaggtaatattagtca |
953 |
Q |
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| T |
40748948 |
aaaccctaaccctaaccgaccacaaaccaacaagaagaagagaaatctaccaggaacaccaggtaatattagtca |
40749022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 909 - 943
Target Start/End: Complemental strand, 28496814 - 28496780
Alignment:
| Q |
909 |
caagaagaagagaaatctaccaggaacaccaggta |
943 |
Q |
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| T |
28496814 |
caagaagaagagaaatcttccaggaacaccaggta |
28496780 |
T |
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