View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5672_low_12 (Length: 303)

Name: NF5672_low_12
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5672_low_12
NF5672_low_12
[»] chr5 (1 HSPs)
chr5 (2-293)||(6400440-6400735)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 6400735 - 6400440
Alignment:
Q  2 tgatcccagtcacatgtatgcagtactgatatgccttgcctttgttttgtgcactttat----gcaagtccaattgagtctgttatgtcccttttacttt 97  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    ||||||||||||||| |||||||||||||||||||||    
T  6400735 tgatcccagtcacatgtatgcaatactgatatgccttgccagtgttttgtgcactttatatatgcaagtccaattgagcctgttatgtcccttttacttt 6400636  T
Q  98 tgacagataacgggcttttgtttctttgaatagctcgatatttcattatattgtatggagcaggttcaaactataatttagttcatttagtgtttgacca 197  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6400635 tgacagataacgggcttttgtttctttgaatagctcgatattacattatattgtatggagcaggttcaaactataatttagttcatttagtgtttgacca 6400536  T
Q  198 tgattgtgagggattaagggatggtgaggtctacgatgttcaaacctttggcaatactgcagatgatccgtttgcatataaaacttatttcctatg 293  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6400535 tgattgtgagggattaagggatggtgaggtctacggtgttcaaacctttggcaatactgcagatgatccgtgtgcatataaaacttatttcctatg 6400440  T

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