View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5672_low_14 (Length: 269)
Name: NF5672_low_14
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 42153602 - 42153794
Alignment:
| Q |
18 |
atgaaaaagaagaagaagactaacgagaaggagggtaagtaggagcattttgaaaccagagttcagcttgaagagcttcagaagaagattcaggtttagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42153602 |
atgaaaaagaagaagaagactaacgagaaggagggtaagtaggagcattttgaaaccagagttcagcttgaagagcttcggaagaagattcaggtttagt |
42153701 |
T |
|
| Q |
118 |
gaaatcaaagaaacgtgctgcgtcgaattcgtattcaagatcaatttcatgagctatgaaaacgtgtggtatttcagtttcttcgtcttcttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42153702 |
gaaatcaaagaaacgtgctgcgtcgaattcgtattcaagatcaatttcatgagctatgaaaacgtgtggtatttcggtttcttcgtcttcttc |
42153794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University