View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_low_15 (Length: 267)
Name: NF5672_low_15
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 257
Target Start/End: Original strand, 32396416 - 32396649
Alignment:
| Q |
24 |
taagctacgcactccacattatgttggtattccctcttataaatttctctttaagagccaacatcgatgaactcctattccctaagaagcctctgctagc |
123 |
Q |
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| T |
32396416 |
taagctacgcactccacattatgttggtattccctcttataaatttctctttaagagccaacatcgatgaactcctattccctaagaagcctctgctagc |
32396515 |
T |
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| Q |
124 |
cacagacaacaagagatttgtgattatcactcttgtgctcttagtattctcctatcttgctgctatagctatcccagatatttggtacttctttcagttt |
223 |
Q |
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| T |
32396516 |
cacagacaacaagagatttgtgattatcactcttgtgctcttagtattctcctatcttgctgctatagctatcccagatatttggtacttctttcagttt |
32396615 |
T |
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| Q |
224 |
ttaggatcaacaactgccctgtcccttgcctttg |
257 |
Q |
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| T |
32396616 |
ttaggatcaacaactgccctgtcccttgcctttg |
32396649 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 36139751 - 36139840
Alignment:
| Q |
56 |
cctcttataaatttctctttaagagccaacatcgatgaactcctattccctaagaagcctctgctagccacagacaacaagagatttgtg |
145 |
Q |
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| T |
36139751 |
cctcttctcaatttctctttgagaaccaatattgatgaattcttcttccctaaaaaacctttgttagccacagataacaagagatttgtg |
36139840 |
T |
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