View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5672_low_20 (Length: 249)
Name: NF5672_low_20
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29420445 - 29420676
Alignment:
| Q |
1 |
ttgaattttggttgctctcattaagtccctacccttttttgggactaaaacagtaagtcactacatagtgcttattttcttcttccaaacacacccnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29420445 |
ttgaattttggttgctctcattaagtccctacccttttttgggactaaaacagtaagtcactacatagtgcttattttcttcttccaaacac--cctttt |
29420542 |
T |
|
| Q |
101 |
nnngatttattctaatgcatgtcacgagctaatttattatttcctcgttttcttgcttccgtcttatcagcatcacgttgaagagaaaaatacattctat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29420543 |
tttgatttattctaatgcatgtcacgagctaatttattatttcctcgttttcttgcttacgtcttatcagcatcacgttgaagagaaaaatacattctat |
29420642 |
T |
|
| Q |
201 |
atatagaataataatttgctgctaagtagaattt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29420643 |
atatagaataataatttgctgctaagtagaattt |
29420676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University