View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_low_23 (Length: 237)
Name: NF5672_low_23
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45079192 - 45079414
Alignment:
| Q |
1 |
ttattaactaattctaaaattttccaaatgctacaaaataaaagtgatcatataagtagtgactatatagtatatacctgagatccaagaataacagcat |
100 |
Q |
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| T |
45079192 |
ttattaactaattctaaaattttccaaatgctacaaaataaaagttatcatataagtagtgactatataatatatacctgagatccaagaataacagcat |
45079291 |
T |
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| Q |
101 |
ctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaataagttgtgcaccaccatcatttgcata |
200 |
Q |
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| T |
45079292 |
ctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaataagttgtgcaccaccatcatttgcata |
45079391 |
T |
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| Q |
201 |
ttggctaaggttggttattgctg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45079392 |
ttggctaaggttggttattgctg |
45079414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 45076138 - 45076291
Alignment:
| Q |
71 |
tatatacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaac |
170 |
Q |
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| T |
45076138 |
tatatacctgagatgcaagaatgacagaatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaac |
45076237 |
T |
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| Q |
171 |
aataagttgtgcaccaccatcatttgcatattggctaaggttggttattgctga |
224 |
Q |
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| T |
45076238 |
aataagttgtgcaccaccatcatttgcatattggctaagattggttattgctga |
45076291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 45083553 - 45083706
Alignment:
| Q |
71 |
tatatacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaac |
170 |
Q |
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| T |
45083553 |
tatatacctgagatgcaagaatgacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttagccatttacctggtggaac |
45083652 |
T |
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| Q |
171 |
aataagttgtgcaccaccatcatttgcatattggctaaggttggttattgctga |
224 |
Q |
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| T |
45083653 |
aataagttgtgcaccaccatcatttgcatattggctaagattggttattgctga |
45083706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 45068503 - 45068654
Alignment:
| Q |
73 |
tatacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaa |
172 |
Q |
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|||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45068503 |
tatacctgagatgcaagaatgacagcacccttttggagaaaaagagtgaaatggcttgtgagattgaagcttcctgttagccatttacctggtggaacaa |
45068602 |
T |
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| Q |
173 |
taagttgtgcaccaccatcatttgcatattggctaaggttggttattgctga |
224 |
Q |
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| T |
45068603 |
taagttgtgcaccaccatcatttgcatattggctaagattggttattgctga |
45068654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 34505937 - 34506084
Alignment:
| Q |
74 |
atacctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaacaat |
173 |
Q |
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| T |
34505937 |
atacctgagatccaagaatgaccgcgcctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccagttaaccatttacctggtggaacaat |
34506036 |
T |
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| Q |
174 |
aagttgtgcaccaccatcatttgcatattggctaaggttggttattgc |
221 |
Q |
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| T |
34506037 |
aagttgtgcaccaccatcatttgcatactggctaagtttggttattgc |
34506084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34505884 - 34505921
Alignment:
| Q |
1 |
ttattaactaattctaaaattttccaaatgctacaaaa |
38 |
Q |
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| T |
34505884 |
ttattaactgattataaaattttccaaatgctacaaaa |
34505921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 41333000 - 41332905
Alignment:
| Q |
76 |
acctgagatccaagaataacagcatctttttggagaaaaagagtgaaatggcttgtgagattgaagcttccggttagccatttacctggtggaaca |
171 |
Q |
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| T |
41333000 |
acctgagaaccaagaatgacagcatctttgtgtaggaataaagtgaaatgactggtgagattgaagctaccagtcaaccatcttcctggtggaaca |
41332905 |
T |
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