View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_low_24 (Length: 232)
Name: NF5672_low_24
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_24 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 24820293 - 24820220
Alignment:
| Q |
159 |
cacactatcaaagactttactcattttaaaagaaaattagtagtacccattaaaatctaactctatgacattaa |
232 |
Q |
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| T |
24820293 |
cacactatcaaagactttactcattttaaaagaaaattagtagtacccattaaaatctaactctatgacattaa |
24820220 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 35241266 - 35241372
Alignment:
| Q |
39 |
attagagtatatagcaatcttaaaattgaaagtagactaaatatagggaaattacaattgacta-ttttttcctgataacattaagttccataatctgga |
137 |
Q |
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| T |
35241266 |
attagagtatataacaatcttaaaattggaagtaagcaaagtatagggaaattacagtcgactatttttttcttgattacattaaatcccataatctgaa |
35241365 |
T |
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| Q |
138 |
tttggta |
144 |
Q |
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| T |
35241366 |
tttggta |
35241372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24820804 - 24820764
Alignment:
| Q |
1 |
agctcatttacctctcattgttggtgtcaaagtgcttcatt |
41 |
Q |
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| T |
24820804 |
agctcatttacctctcattgttggtgtcaaagtgcttcatt |
24820764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35902431 - 35902391
Alignment:
| Q |
1 |
agctcatttacctctcattgttggtgtcaaagtgcttcatt |
41 |
Q |
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| T |
35902431 |
agctcatttacatctcattgttggtgtcatagtgcttcatt |
35902391 |
T |
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