View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5672_low_3 (Length: 441)
Name: NF5672_low_3
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 29420454 - 29420036
Alignment:
| Q |
1 |
caaaattcaagaataaatcaaatgatttcacaaatgtatctagacaccatatccaaatgatgcactcctaagtcatccactctgtaacctggtaatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29420454 |
caaaattcaagaataaatcaaatgatttcacaaatctatctagacaccatatccaaatgatgcactcctaagtcatccactctgtaacccagtaatcttt |
29420355 |
T |
|
| Q |
101 |
cttttgactggttctgtacccagtaatcatgttttgttcttataaatttgcttaatccatgatgaaaatattcactttccttgacttctatgtaaatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29420354 |
cttttgactggttctgtacccagtaatcatgttttattcttataaatttgcttaatccatgatgaaaatattcactttccttgacttctatgtaaatgat |
29420255 |
T |
|
| Q |
201 |
ggtgcaaaaacattataatacatatattcttttagttttttactcttgtggtgcacttagtgtgcgttttgaaatatctgtggacactgctatggtttct |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29420254 |
----------------aatatatatattcttttagttttttactcttgtggtgcacttagtgtgcgttttgaaatatctgtggacactgctatggtttct |
29420171 |
T |
|
| Q |
301 |
ataaccactcatgaacctcctaaaaataataggatctaaccactttacatcataaatccacaacagttgaaaatggaaatcataagttctagacaaatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29420170 |
ataaccactcatgaacctcctaaaaataataggatctaaccactttacatcataaatccacaacagttgaaaatggaaatcataagttctagacaaatct |
29420071 |
T |
|
| Q |
401 |
ttaaaactttgatttccttttcagcagtattatct |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
29420070 |
ttaaaactttgatttccttttcagcagtataatct |
29420036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University