View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5672_low_7 (Length: 387)
Name: NF5672_low_7
Description: NF5672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5672_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27763065 - 27762862
Alignment:
| Q |
1 |
tgatgaaaaatgaaatattagaaaaaaggatatataaaccacgtgagaaagtgcagaaaaggtgtagtgcttttcagaaatcagaaaggtgtacttagta |
100 |
Q |
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| T |
27763065 |
tgatgaaaaatgaaatattagaaaaaaggatatataaaccacgtgagaaggtgcagaaaaggtgtagtgcttttcagaaatcagaaaggtgtacttagta |
27762966 |
T |
|
| Q |
101 |
aaacgaaaacacactctctt-ttttccttacaccttctttgatatgctttggtttcttcccttcctaatttcgtagatgctgtcacacccttatgccaat |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762965 |
aaacgaaaacacactctctttttttccttacaccttctttgatatgctttggtttcttcccttcctaatttcgtagatgctgtcacacccttatgccaat |
27762866 |
T |
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| Q |
200 |
gaac |
203 |
Q |
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|||| |
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| T |
27762865 |
gaac |
27762862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 242 - 370
Target Start/End: Complemental strand, 27762812 - 27762684
Alignment:
| Q |
242 |
gtggacccaaatctatatagaaataagcataaaaacaacataacaagctgtgtaatagctacacctcacattcaaatctgtgttggagtttgtaggaaat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762812 |
gtggacccaaatctatatagaaataagcataaaaacaacataacaagctgtgtaatagctacacctcacattcaaatctgtgttggagtttgtaggaaat |
27762713 |
T |
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| Q |
342 |
ataatcaaatcaaatggctcttgtaccta |
370 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27762712 |
ataatcaaatcaaatggctcttgtaccta |
27762684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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