View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5673-Insertion-2 (Length: 843)

Name: NF5673-Insertion-2
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5673-Insertion-2
NF5673-Insertion-2
[»] chr4 (1 HSPs)
chr4 (8-843)||(37469530-37470367)
[»] chr5 (3 HSPs)
chr5 (196-334)||(29931550-29931688)
chr5 (46-109)||(29931775-29931838)
chr5 (196-310)||(29934298-29934412)


Alignment Details
Target: chr4 (Bit Score: 794; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 8 - 843
Target Start/End: Original strand, 37469530 - 37470367
Alignment:
Q  8 ggtagaacttgtgaagccgaaatggtacgagagatttctggttcttgctgtacagggagttttcttcaatgcattctttgtactttacatactttcccca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469530 ggtagaacttgtgaagccgaaatggtacgagagatttctggttcttgctgtacagggagttttcttcaatgcattctttgtactttacatactttcccca 37469629  T
Q  108 aaggtggctcatagagttgttgggtaccttgaagaagaagctatacattcttacactgagtatttgaaggacattgatagtggtgcaattgaaaatgttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469630 aaggtggctcatagagttgttgggtaccttgaagaagaagctatacattcttacactgagtatttgaaggacattgatagtggtgcaattgaaaatgttc 37469729  T
Q  208 ctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggctcaccatcggga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469730 ctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggctcaccatcggga 37469829  T
Q  308 tgtgaaccatttcgcttcagtgagtgttctttatcacttgtataattatatatttttcttcacaaaactatgcgtattctaccaacttatcatcttaaat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37469830 tgtgaaccatttcgcttcagtgagtgttctttatcacttgtataattatatatttttcttcacaaaactatgcttattctaccaacttatcatcttaaat 37469929  T
Q  408 ttgtttacggtatatttgtttctgtgcttcttttcattttgtcatcctcttgaacttgtgatctcaatatattggatcactttttatttgaaaaacagaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469930 ttgtttacggtatatttgtttctgtgcttcttttcattttgtcatcctcttgaacttgtgatctcaatatattggatcactttttatttgaaaaacagaa 37470029  T
Q  508 catgaaaactgtaaaatttaggattgatataaggtaatatacacaaaggataataatctgacggaaaccagattgcattttcccccaatttcctctcatg 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37470030 catgaaaactgtaaaatttaggattgatataaggtaatatacacaaaggataataatctgacggaaaccagattgcatttccccccaatttcctctcatg 37470129  T
Q  608 cacttcctggaattcgaaagtgtagtgtaggttgtgttgctatgtacaaagggctgcagaagtatatgactacccttaggcatacatttgttttcaag-g 706  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||      
T  37470130 cacttcctggaattcgaaagtgtagtgtaggttgtgttgctatgcacaaagggctgcagaagtatatgactaccataaggcatacatttgttttcaagtt 37470229  T
Q  707 tagtcaaatagacagaatcagtagaaatttaattaacttcacccacataatgaagctttg-ttatatccaacttttagggaggttagaaattgtaagcac 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37470230 tagtcaaatagacagaatcagtagaaatttaattaacttcacccacataatgaagctttgattatatccaacttttagggaggttagaaattgtaagcac 37470329  T
Q  806 ttgggggaatggggagagtcaaacaagctggttctcta 843  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  37470330 ttgggggaatgaggagagtcaaacaagctggttctcta 37470367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 29931688 - 29931550
Alignment:
Q  196 ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc 295  Q
    |||||||||| ||||||||||| |||||||| || |||||||| ||||| |||||||| |   | || |||||||| || || ||||||||||| |||||    
T  29931688 ttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaaggatgttatcactgttattcgtgctgatgaggc 29931589  T
Q  296 tcaccatcgggatgtgaaccatttcgcttcagtgagtgt 334  Q
    ||| ||| ||||||| || || || ||||| ||||||||    
T  29931588 tcatcatagggatgtcaatcactttgcttcggtgagtgt 29931550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 29931838 - 29931775
Alignment:
Q  46 tggttcttgctgtacagggagttttcttcaatgcattctttgtactttacatactttccccaaa 109  Q
    ||||| || ||| ||| ||||||||||||||||||||||||||  |||||||||| || |||||    
T  29931838 tggttattactgcacaaggagttttcttcaatgcattctttgttttttacatactctcaccaaa 29931775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 29934412 - 29934298
Alignment:
Q  196 ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc 295  Q
    |||||||||| ||||||||||| ||||| || || |||||||| ||||| || ||||| |   | || |||||| | || || ||||||||||| |||||    
T  29934412 ttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaatgatgcaactcttaaggatgttgtcactgttattcgtgctgatgaggc 29934313  T
Q  296 tcaccatcgggatgt 310  Q
    ||| ||| |||||||    
T  29934312 tcatcatagggatgt 29934298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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