View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5673-Insertion-3 (Length: 619)

Name: NF5673-Insertion-3
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5673-Insertion-3
NF5673-Insertion-3
[»] chr8 (3 HSPs)
chr8 (193-619)||(42622823-42623249)
chr8 (8-151)||(42622682-42622826)
chr8 (276-307)||(31916619-31916650)
[»] chr3 (4 HSPs)
chr3 (256-307)||(21367662-21367713)
chr3 (256-305)||(22203425-22203474)
chr3 (261-306)||(39980729-39980774)
chr3 (187-247)||(20880407-20880466)
[»] chr6 (2 HSPs)
chr6 (187-290)||(24626225-24626324)
chr6 (261-306)||(6536615-6536660)
[»] chr5 (4 HSPs)
chr5 (261-307)||(32703300-32703346)
chr5 (261-307)||(43300878-43300924)
chr5 (261-306)||(35445868-35445913)
chr5 (263-307)||(36318776-36318820)
[»] chr1 (6 HSPs)
chr1 (258-307)||(38503489-38503538)
chr1 (268-307)||(27820361-27820400)
chr1 (187-246)||(37473329-37473388)
chr1 (261-307)||(37842379-37842425)
chr1 (261-306)||(3234040-3234085)
chr1 (271-307)||(24334203-24334239)
[»] chr7 (3 HSPs)
chr7 (260-311)||(34744027-34744078)
chr7 (215-306)||(20269534-20269621)
chr7 (261-306)||(19022610-19022655)
[»] chr4 (3 HSPs)
chr4 (261-307)||(17822889-17822935)
chr4 (261-306)||(21731681-21731726)
chr4 (261-305)||(9760440-9760484)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 193 - 619
Target Start/End: Original strand, 42622823 - 42623249
Alignment:
Q  193 taagcttaaacgagctatttcgatagcaaatgataaaaccaagttaagttgttttcctatatttaatgtataagttgtttttctaagctatcttggagaa 292  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42622823 taagtttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgttttcctatatttaatttataagttgtttttctaagctatcttggagaa 42622922  T
Q  293 tttataaaaataagccgaagaaaaatgtcattagttgttcacaaaagttcttctaaacaataattacaaaacttatacgagagattggggaatgatagtt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42622923 tttataaaaataagccgaagaaaaatgtcattagttgttcacaaaagttcttctaaacaataattacaaaacttatacgagagattagggaatgatagtt 42623022  T
Q  393 nnnnnnnnnnnnnnnnngatagtgggaattaaggaaaagacatactatttttgatgtgagaaataagatcggaactgagagtgagagagaaatcggaagg 492  Q
                     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42623023 aaaaataaaaataaaaagatagtgggaattaaggaaaagacatactatttttgatgtgagagataagatcggaactgagagtgagagagaaatcggaagg 42623122  T
Q  493 agaatgaagattcatgggtttgaagagtacaagagccctctcatcgttaggaactggtagggattcaccttcttcttccacaatcggaggcaattcagga 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42623123 agaatgaagattcatgggtttgaagagtacaagagccctctcatcgttaggaactggtaaggattcaccttcttcttccacaatcggaggcaattcagga 42623222  T
Q  593 tcctaatcagaataatcgaaaagttaa 619  Q
    |||||||||||||||||||||||||||    
T  42623223 tcctaatcagaataatcgaaaagttaa 42623249  T

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Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 42622682 - 42622826
Alignment:
Q  8 gtcctcgtcgttttgg-cctgattgtctgaataatcacattgttttgaccacgatagttgatctgtaattaattaaaattaaatcaatataaaaatctac 106  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42622682 gtcctcctcgttttggtcctgattgtctgaataatcacattgttttgaccacgatagttgatctgtaattaattaaaattaaatcaatataaaaatctac 42622781  T
Q  107 tcaagataagatgtaaagcatgtttggataaacaacttatgtaag 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42622782 tcaagataagatgtaaagcatgtttggataaacaacttatgtaag 42622826  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 307
Target Start/End: Original strand, 31916619 - 31916650
Alignment:
Q  276 taagctatcttggagaatttataaaaataagc 307  Q
    ||||||||||||||||||||||||||||||||    
T  31916619 taagctatcttggagaatttataaaaataagc 31916650  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 21367662 - 21367713
Alignment:
Q  256 taatgtataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    ||||||||||||||||||  ||||||||||||||||| |||| |||||||||    
T  21367662 taatgtataagttgttttcataagctatcttggagaacttatgaaaataagc 21367713  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 22203425 - 22203474
Alignment:
Q  256 taatgtataagttgtttttctaagctatcttggagaatttataaaaataa 305  Q
    |||| |||||||||||||  ||||||||||||||||| |||| |||||||    
T  22203425 taatctataagttgttttcataagctatcttggagaacttatgaaaataa 22203474  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 39980729 - 39980774
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataag 39980774  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 20880407 - 20880466
Alignment:
Q  187 tatgtataagcttaaacgagctatttcgatagcaaatgataaaaccaagttaagttgtttt 247  Q
    |||||||||||||| |  ||||||||  |||||||||||||||| |||||||| |||||||    
T  20880407 tatgtataagcttacataagctatttttatagcaaatgataaaa-caagttaaattgtttt 20880466  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 24626225 - 24626324
Alignment:
Q  187 tatgtataagcttaaacgagctatttcgatagcaaatgataaaaccaagttaagttgttttcctatatttaatgtataagttgtttttctaagctatctt 286  Q
    |||||||||||||| |  ||||||||| |||| ||| |||||||| ||||||| |||||||  |||||    | |||||||||||||  |||||||||||    
T  24626225 tatgtataagcttacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatat----tctataagttgttttcataagctatctt 24626320  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 6536615 - 6536660
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    ||||||||||||||  ||||||| ||||||||||||| ||||||||    
T  6536615 tataagttgtttttagaagctatattggagaatttatgaaaataag 6536660  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 32703346 - 32703300
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||    
T  32703346 tataagttgttttcataagctatctaggagaatttataaaaataagc 32703300  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 43300878 - 43300924
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||    
T  43300878 tataagttgtttttgtaagctatcttggagaacttatgaaaataagc 43300924  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 35445913 - 35445868
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||| |||| || |||||||||||||||||||||| ||||||||    
T  35445913 tataaggtgttcttgtaagctatcttggagaatttatgaaaataag 35445868  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 36318776 - 36318820
Alignment:
Q  263 taagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  36318776 taagttgttttcataagctatcttggagaatttatgtaaataagc 36318820  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 38503538 - 38503489
Alignment:
Q  258 atgtataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    ||||||||||||||||| | ||||||||||||||| |||| |||||||||    
T  38503538 atgtataagttgtttttgttagctatcttggagaacttatgaaaataagc 38503489  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 27820400 - 27820361
Alignment:
Q  268 tgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  27820400 tgtttttataagctatcttggagaatttatgaaaataagc 27820361  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 37473329 - 37473388
Alignment:
Q  187 tatgtataagcttaaacgagctatttcgatagcaaatgataaaaccaagttaagttgttt 246  Q
    |||||||||||||| |  ||||||||  ||||||||||||||||| ||||||||| ||||    
T  37473329 tatgtataagcttacataagctatttttatagcaaatgataaaacaaagttaagtcgttt 37473388  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 37842425 - 37842379
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||||  |||||||||||| |||| ||||||||||||||    
T  37842425 tataagttgttttcataagctatcttgaagaacttataaaaataagc 37842379  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 3234085 - 3234040
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  3234085 tataagttgtttttataagctatattggagaacttatgaaaataag 3234040  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 24334203 - 24334239
Alignment:
Q  271 ttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||||||||||||| || |||||||||||    
T  24334203 ttttctaagctatcttggagaacttgtaaaaataagc 24334239  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 34744027 - 34744078
Alignment:
Q  260 gtataagttgtttttctaagctatcttggagaatttataaaaataagccgaa 311  Q
    ||||||||||||||  |||||||| |||||||| ||||||||||||| ||||    
T  34744027 gtataagttgttttcataagctatattggagaacttataaaaataaggcgaa 34744078  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 20269534 - 20269621
Alignment:
Q  215 atagcaaatgataaaaccaagttaagttgttttcctatatttaatgtataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||||| |||||||| ||||||| |||||||  || || |    ||||||||||||| ||||||| | ||||||||||||| ||||||||    
T  20269534 atagcaaaagataaaacaaagttaaattgtttttgtaaatgt----tataagttgttttactaagctgtattggagaatttatgaaaataag 20269621  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 19022655 - 19022610
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataag 19022610  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 17822935 - 17822889
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataagc 307  Q
    |||||||||||||  ||||||||||||||||| |||| |||||||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagc 17822889  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 21731726 - 21731681
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataag 306  Q
    |||||||||||||| |||||||| ||||||||||||| ||| ||||    
T  21731726 tataagttgtttttataagctatattggagaatttatgaaagtaag 21731681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 9760440 - 9760484
Alignment:
Q  261 tataagttgtttttctaagctatcttggagaatttataaaaataa 305  Q
    |||||||||||||| |||||||| |||||||| |||| |||||||    
T  9760440 tataagttgtttttataagctatattggagaacttatgaaaataa 9760484  T

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