View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5673_low_1 (Length: 1050)
Name: NF5673_low_1
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5673_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 490 - 1043
Target Start/End: Complemental strand, 37469040 - 37468489
Alignment:
| Q |
490 |
gtaaaaatttgactaaatgaaattaattgtatgcaatcacatgtgtcggtttaaggcaccatacaccttccgtcagaagtgtttgtgctacagagaacac |
589 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37469040 |
gtaaaaatttgactaaatgaaattaattgaatgcaatcacatgtgtcagtgtaaggcaccatacaccttccgtcagaagtgtttgtgctacatagaacac |
37468941 |
T |
|
| Q |
590 |
ttccttcttctcttttcttttgttatggatcatacaataggaaatttcaaaatcaagtgctatagtatatcacacaccttaaaaaacacatcagtgggaa |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37468940 |
ttccttcttctcttttcttttgttatggatcatacaataggaaatttcaaaatcaagtgctatagtatatcacacaccttaaaaaacacatcagtgggaa |
37468841 |
T |
|
| Q |
690 |
ttctgagaagcttcactgtcctgtaagcgactttatccagaaaattcttcggcacatgatgcttattcagatcaatggaaacgtttgattgataagtctc |
789 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37468840 |
ttctgagaagcttcactgtcctgtaagcgactttatccagaaaattcttcggcacatgatgcttattcagatcaatggaaacgtttgattgataagtctc |
37468741 |
T |
|
| Q |
790 |
ccatggctacaattaacaacgaaatctcgtctcataagtcaaattccacttatagaaatcatgaattagcgaaaaaacaaacgaatgcnnnnnnnnnnnt |
889 |
Q |
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| T |
37468740 |
ccatggctacaattaacaacg-aatctcgtctcataagtcaaattccacttatagaaatcatgaattagcg-aaaaacaaacgaatgcaaaaaaaaaaat |
37468643 |
T |
|
| Q |
890 |
cttcaattcagaaaatcgttaccatgaagcagttccaaggccactctgttccatcctctctcataatctttggcctcgaaatcccccaataactcgacgc |
989 |
Q |
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| T |
37468642 |
cttcaattcagaaaatcgttaccatgaagcagttccaaggccactcagttccatcctctctcataatctttggcctcgaaatcccccaataactcgacgc |
37468543 |
T |
|
| Q |
990 |
aaccacgttattcttcgttccggaactctcctccttcttcttctcgttcatctc |
1043 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37468542 |
aaccacgttattcttcgttccggaactctcctccttcttcttctcgttcttctc |
37468489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 37469520 - 37469089
Alignment:
| Q |
1 |
aggtgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469520 |
aggtgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctc |
37469421 |
T |
|
| Q |
101 |
caaccattccagggacagctgcaactgtttcaagcatcattgcacggcaaccataacgtctctgaaaatattcatggattattatgaataacaattgaga |
200 |
Q |
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| T |
37469420 |
caaccattccagggacagctgcaactgtttcaagcatcattgcacggcaaccataacgtctctgaaaatattcatggattattatgaataacaattgaga |
37469321 |
T |
|
| Q |
201 |
caatttccatgaagaacgtcagaacaaaattttgtgatgaacctacaatgtctagtatagtatgtatct--atannnnnnnagagcaaatacatgacatg |
298 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37469320 |
caatttccatgaag-acgtcagaacaaaattttgtgatgaacctacaatgtctagtatagtatgtatctagatatttttttagagcaaatacatgacatg |
37469222 |
T |
|
| Q |
299 |
caatatcaatgatgcatatttccaggaatnnnnnnntaataatatattagtaaatgtcgctaaacaaatcaatttcttaagagcacataaatataccacc |
398 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37469221 |
caatatcaacgatgcatatttccaggaataaaaaaataataatatattagtacatgttgctaaacaaatcaatttcttaagagcacataaatataccacc |
37469122 |
T |
|
| Q |
399 |
ctttcatatatagcaaacactttgtatgaagcac |
432 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |
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| T |
37469121 |
c-ttcatatatagcaaacactttgtatgaagcac |
37469089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 29934613 - 29934764
Alignment:
| Q |
4 |
tgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctccaa |
103 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||| || || || | ||| || ||||||||||| | |
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| T |
29934613 |
tgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccggcatgttgaaattttcttagagattttaagtgtaaaagcatccctccca |
29934712 |
T |
|
| Q |
104 |
ccattccagggacagctgcaactgtttcaagcatcattgcacggcaaccata |
155 |
Q |
| |
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||||||||||||| ||||| | |||||| |||||||||||| |||||||||| |
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| T |
29934713 |
ccattccagggaccgctgctattgtttctagcatcattgcatggcaaccata |
29934764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 29931889 - 29932034
Alignment:
| Q |
4 |
tgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctccaa |
103 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||||||||| | || |||||||||| || ||||| | ||| || ||||||||||| | |
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| T |
29931889 |
tgcatcctctcattctctgcttcttcaagtaatgctttgatccaaccaccagtgtgttgaaattttcttagagacttcaagtgtaaaagcatccctccca |
29931988 |
T |
|
| Q |
104 |
ccattccagggacagctgcaactgtttcaagcatcattgcacggca |
149 |
Q |
| |
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||||| ||||| ||||||| |||||| |||||||||||| |||| |
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| T |
29931989 |
ccattggcgggacggctgcaattgtttccagcatcattgcatggca |
29932034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 10972316 - 10972464
Alignment:
| Q |
16 |
ttctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgcaacagcatccctccaaccattccaggga |
115 |
Q |
| |
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||||| |||||||| ||||||||||||| ||| |||||||| |||| |||| || | ||| ||| ||| | |||||| ||||| ||||| ||||||| |
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| T |
10972316 |
ttctcggcttcttctagcaatgctttgatccatccaccactttgctcaaatcggcgcaatgatttgcagtgaagcagcattcctcctaccatcccaggga |
10972415 |
T |
|
| Q |
116 |
cagctgcaactgtttcaagcatcattgcacggcaaccataacgtctctg |
164 |
Q |
| |
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|||| || ||||| |||||||||||||| ||||| ||||| | |||||| |
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| T |
10972416 |
cagcagctactgtctcaagcatcattgctcggcatccataccttctctg |
10972464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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