View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5673_low_13 (Length: 206)
Name: NF5673_low_13
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5673_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 47602281 - 47602464
Alignment:
| Q |
1 |
tcctcatgcaactctccttcttctaaaccttcactttcttcaatatgaacaactttttcttcctcatgtaagtctccttc---taaaccttcatcttctt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
47602281 |
tcctcatgcaactctccttcttctaaaccttcactttcttcaatatgaacaactt---cttcctcatgtaactctccttcttctaaaccttcatcttctt |
47602377 |
T |
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| Q |
98 |
caataggcaactcattcaggcaaatttaaatcaatatccaatagaactctattattgtcttcaaaaagtcttcattatcttcttcaa |
184 |
Q |
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| T |
47602378 |
caataggcaactcattcaggcaaattcaaatcaatatccaatagaactctattattgccttaaaaaagtcttcattatcttcttcaa |
47602464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30460631 - 30460517
Alignment:
| Q |
1 |
tcctcatgcaactctccttcttctaaaccttcactttcttcaatatgaacaactttttcttcctcatgta---agtctccttctaaaccttcatcttctt |
97 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| | ||| ||||||||||||||||||||| |
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| T |
30460631 |
tcctcatgcaactctccttcttctaaaccttcattttcttcaatatgaaaaac---ttcttcctcatgcatctcttcttcttctaaaccttcatcttctt |
30460535 |
T |
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| Q |
98 |
caataggcaactcattca |
115 |
Q |
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|||||||||||||||||| |
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| T |
30460534 |
caataggcaactcattca |
30460517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 30460498 - 30460430
Alignment:
| Q |
114 |
caggcaaatttaaatcaatatccaatagaactctattattgtcttcaaaaagtcttcattatcttcttcaa |
184 |
Q |
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| T |
30460498 |
caggcaaatttaaatctatatccaatacaactctattattgtctgc--aaagtcttcaatatcttcttcaa |
30460430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 33403959 - 33403899
Alignment:
| Q |
122 |
tttaaatcaatatccaatagaactctattattgtcttcaaaaagtcttcattatcttcttcaa |
184 |
Q |
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|||||||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||| |
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| T |
33403959 |
tttaaatctatatccaatacaactctattattgtctgc--aaagtcttcattatcttcttcaa |
33403899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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