View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5673_low_3 (Length: 383)
Name: NF5673_low_3
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5673_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Complemental strand, 43806180 - 43805819
Alignment:
| Q |
6 |
agcagcacagacatatattggacacaagacacaccttcaatcagcgtcggtgtccgggccttataataattaaattgcatgcatacctgaagatcaaaaa |
105 |
Q |
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| T |
43806180 |
agcaacaccgacatgtattggacacaagacacaccttcaatcagcgtcggtgtccaggccttataataattaaattgcatgcatacctgaagatcaaaaa |
43806081 |
T |
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| Q |
106 |
ctccaagaaaaggaacataatcagcaagattaaaggcgccagaaagttccatcccttgttgaatttgccccttcaaatcaaactcctcatcaacactaca |
205 |
Q |
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| T |
43806080 |
ctccaagaaaaggaacataatcagcaagattaaaggtgccagaaagttccatcccttgttgaatttgccccttcaaatcaaactcctcatcaacactaca |
43805981 |
T |
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| Q |
206 |
ccccagcaccattttatacacaatatctgctataacaccatgcacaaactcactcacatcaacaacctcacccaaactcacagctttcttcaacgattcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43805980 |
ccccagcaccattttatacacaatatctgctataacaccatgcacaaactcactcacatcaacaacctcacccaaactcacagctttcttcaacgattcc |
43805881 |
T |
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| Q |
306 |
aaagccacttttagttccctctgcctcaaaggcccaaatgcttcaactttagaagcacttaa |
367 |
Q |
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| T |
43805880 |
aaagccacttttagttccctctgcctcaaaggcccaaacgattcaactttagaagcacttaa |
43805819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 30044938 - 30044990
Alignment:
| Q |
87 |
catacctgaagatcaaaaactccaagaaaaggaacataatcagcaagattaaa |
139 |
Q |
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| T |
30044938 |
catacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaa |
30044990 |
T |
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