View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5673_low_5 (Length: 345)

Name: NF5673_low_5
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5673_low_5
NF5673_low_5
[»] chr4 (4 HSPs)
chr4 (30-333)||(19888248-19888560)
chr4 (31-303)||(31889722-31889994)
chr4 (245-333)||(6660403-6660500)
chr4 (245-333)||(6663993-6664090)
[»] chr5 (2 HSPs)
chr5 (31-333)||(25635073-25635384)
chr5 (72-296)||(25641617-25641841)
[»] chr1 (1 HSPs)
chr1 (30-333)||(29401990-29402308)
[»] chr2 (1 HSPs)
chr2 (219-333)||(1234642-1234765)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 333
Target Start/End: Complemental strand, 19888560 - 19888248
Alignment:
Q  30 cttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaattt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19888560 cttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaattt 19888461  T
Q  130 gaatagagttttatgttccttgtacgtgctatcaatatcaagaggaggaacaccttttttcttttggtataaatacttatgcacaggctaaacaaaaatc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19888460 gaatagagttttatgttccttgtacgtgctatcaatatcaagaggaggaacaccttttttcttttggtataaatacttatgcacaggctaaacaaaaatc 19888361  T
Q  230 cctcctttacattttatgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaatttcttcttgat 320  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||    
T  19888360 cctcctttacattttatgcttcaaattatacatgaatagattttcatgagtctgacatataattctgggttacatcctcctgaaagaatttcttcttgat 19888261  T
Q  321 agttctgaatcct 333  Q
    |||||||||||||    
T  19888260 agttctgaatcct 19888248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 31 - 303
Target Start/End: Original strand, 31889722 - 31889994
Alignment:
Q  31 ttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaatttg 130  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31889722 ttatgttgtaactgaaatagaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaatttt 31889821  T
Q  131 aatagagttttatgttccttgtacgtgctatcaatatcaagaggaggaacaccttttttcttttggtataaatacttatgcacaggctaaacaaaaatcc 230  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||     
T  31889822 aagagagttttatgttccttgtacgtgctatcaatatcaagatgaggaacaccatttttctttcggtataaatacttatgcacaggctaaacaaagatct 31889921  T
Q  231 ctcctttacattttatgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttaca 303  Q
    ||||||||| ||||||||||||| ||||||||| ||||||| ||| ||||||| || |||| ||| |||||||    
T  31889922 ctcctttactttttatgcttcaagctatacatggatagattatcatgagtctgccacataactctaggttaca 31889994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 6660500 - 6660403
Alignment:
Q  245 atgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaatttcttcttgatagttctgaatcct 333  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||         |||||||||||||||||||||| ||||||||    
T  6660500 atgcttcaagttatacatgaatagattttcatgagtctgacatataattcagggttacatcctcctgaaagaatttcttcttgatagttatgaatcct 6660403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 6664090 - 6663993
Alignment:
Q  245 atgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaatttcttcttgatagttctgaatcct 333  Q
    |||||||||  |||||||||||||||||||  |||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||    
T  6664090 atgcttcaagttatacatgaatagattttcttgagtctgacatataattcagggttacatcctcctgaaagaatttcttcttgatagttctgaatcct 6663993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 31 - 333
Target Start/End: Complemental strand, 25635384 - 25635073
Alignment:
Q  31 ttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaatttg 130  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25635384 ttatgttgtaaccgaaatagaattgataaggcacgttgtagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaatttt 25635285  T
Q  131 aatagagttttatgttccttgtacgtgctatcaatatcaagaggaggaacaccttttttcttttggtataaatacttatgcacaggctaaacaaaaatcc 230  Q
    || |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25635284 aagagagttttatgttccttgtaggtgctatcaatatcaagatgaggaacaccatttttcttttggtataaatacttatgcacaggctaaacaaaaatcc 25635185  T
Q  231 ctcctttacattttatgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaatttcttcttgata 321  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||         |||||||||||||||||||    
T  25635184 ctcctttactttttatgcttcaagctatacatgaatagattttcatgagtctgacatataactctggattacatcctcttgaaagaatttcttcttgata 25635085  T
Q  322 gttctgaatcct 333  Q
    ||| ||||||||    
T  25635084 gttttgaatcct 25635073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 72 - 296
Target Start/End: Complemental strand, 25641841 - 25641617
Alignment:
Q  72 ctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaatttgaatagagttttatgttccttgtacgtgctatcaatatcaag 171  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  25641841 ctgcggttgtttttgaggagattgtacctatttatgctcacaagctaactgccaattttaagagagttttatgttccttgtacgtgctatcaatttcaag 25641742  T
Q  172 aggaggaacaccttttttcttttggtataaatacttatgcacaggctaaacaaaaatccctcctttacattttatgcttcaaactatacatgaatagatt 271  Q
    | |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||||  |||||||||||    
T  25641741 atgaggaacaccatttttcttttggtataaatacttatgcacagaccaaacaaaaatccctcctttactttttatgcttcaagctatgtatgaatagatt 25641642  T
Q  272 ttcacgagtctgacatataattctg 296  Q
    |||| ||||||||||||||| ||||    
T  25641641 ttcatgagtctgacatataactctg 25641617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 333
Target Start/End: Complemental strand, 29402308 - 29401990
Alignment:
Q  30 cttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactgccaattt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29402308 cttatgttgtaaccgaaatggaattgataaggcacgttatagctgctgttgtttttgaggagattgtgcctatttatgctcacaagctaactaccaattt 29402209  T
Q  130 gaatagagttttatgttccttgtacgtgctatcaatatcaagaggaggaacac--cttttttcttttggtataaatacttatgcacaggctaaacaaaaa 227  Q
     |||||| |||| ||||||||||||||||||||||||||||||||||||||||   |||||| |||| ||||||||||||||||||||||||||||||||    
T  29402208 taatagaattttctgttccttgtacgtgctatcaatatcaagaggaggaacactttttttttttttttgtataaatacttatgcacaggctaaacaaaaa 29402109  T
Q  228 tccctcctttacattttatgcttcaaact----atacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaatttctt 314  Q
    | |||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||         ||||||||||||    
T  29402108 ttcctcctttacattttatgcttcaaactatacatacatgaatagattttcatgagtctgacatataattctgggttacatcctcctgaaagaatttctt 29402009  T
Q  315 cttgatagttctgaatcct 333  Q
    |||||||||||||||||||    
T  29402008 cttgatagttctgaatcct 29401990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 1234642 - 1234765
Alignment:
Q  219 aaacaaaaatccctcctttacattttatgcttcaaactatacatgaatagattttcacgagtctgacatataattctgggttac---------aaagaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||    
T  1234642 aaacaaaaatccctcctttacattttatgcttcaaactatacatgaatagattttcatgagtctgacatataattctgggttacatcctcctgaaagaat 1234741  T
Q  310 ttcttcttgatagttctgaatcct 333  Q
    |||||||||||| |||||||||||    
T  1234742 ttcttcttgataattctgaatcct 1234765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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