View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5673_low_6 (Length: 307)
Name: NF5673_low_6
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5673_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 34 - 290
Target Start/End: Original strand, 39692397 - 39692661
Alignment:
| Q |
34 |
aaataaaagctctaaattttgattttgttagaatcaattcaaatnnnnnnntttcaaacatatcaaaatttataattctaattaatttcatcatctcgaa |
133 |
Q |
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| T |
39692397 |
aaattaaagctctaaattttgattttgttataatcaattcaagtaaaattttttcaaacatatcaaaatttataattctaattaatttcatcatctcgaa |
39692496 |
T |
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| Q |
134 |
aaattcactttcttttttgttttaaagagtataaccgcgaaactt----acacaaaacccggataatttgtatgttcaaacttgtattccagcgtaccaa |
229 |
Q |
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| T |
39692497 |
aaattcactttcttttttgttttaaagagtataacagcgaaacttgcacacacaaaaaacggagaatttgtatgttcaaacttgtgttccagcgtagcaa |
39692596 |
T |
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| Q |
230 |
atgtcctattttaccatatgatttgcattttcataac----catacacttatttgaagtaaatag |
290 |
Q |
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| T |
39692597 |
atgtccgattttcccatatgatttgcattttcataaccaaacatacacttatttgtggtaaatag |
39692661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 39930752 - 39930685
Alignment:
| Q |
201 |
atgttcaaacttgtattccagcgtaccaaatgtcctattttaccatatgatttgcattttcataacca |
268 |
Q |
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| T |
39930752 |
atgttcgaatttgtgtcccagcataccgaatgtcctattttaccatatgatttgcattttcataacca |
39930685 |
T |
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