View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5673_low_7 (Length: 290)

Name: NF5673_low_7
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5673_low_7
NF5673_low_7
[»] chr4 (2 HSPs)
chr4 (172-221)||(29428316-29428365)
chr4 (173-217)||(49632641-49632685)
[»] chr1 (3 HSPs)
chr1 (172-221)||(49960809-49960858)
chr1 (173-217)||(35719577-35719621)
chr1 (172-221)||(50378361-50378410)
[»] chr7 (4 HSPs)
chr7 (172-217)||(41253080-41253125)
chr7 (178-221)||(41252821-41252864)
chr7 (172-217)||(15969372-15969417)
chr7 (172-221)||(34988708-34988757)
[»] chr2 (2 HSPs)
chr2 (173-221)||(44229687-44229735)
chr2 (172-221)||(15782932-15782981)
[»] chr8 (1 HSPs)
chr8 (178-217)||(10186080-10186119)
[»] chr5 (1 HSPs)
chr5 (172-217)||(7332331-7332376)


Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 29428316 - 29428365
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  29428316 tatcccttactctttaatcttattaggtttgcaacaactaaacctagaaa 29428365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 49632685 - 49632641
Alignment:
Q  173 atcccttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||    
T  49632685 atcccttactctttaatcttattaggtttgcaacaactaaaccta 49632641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 49960858 - 49960809
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  49960858 tatcccttactctttaatcttattaggtttgcaacaactaaacctagaaa 49960809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 35719577 - 35719621
Alignment:
Q  173 atcccttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  35719577 atcccttactctttaatcttattaggtttgcaacaattaaaccta 35719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 50378361 - 50378410
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||    
T  50378361 tatctcttactctttaatcttattaggtttgcaacaactaaacctagaaa 50378410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 41253125 - 41253080
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  41253125 tatcccttactctttaatcttattaggtttgcaacaactaaaccta 41253080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 41252864 - 41252821
Alignment:
Q  178 ttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  41252864 ttactctttaatcttattaggtttgcaacaactaaacctagaaa 41252821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 15969417 - 15969372
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    ||||| ||| ||||||||||||||||||||| ||||| ||||||||    
T  15969417 tatcctttattctttaatcttattaggtttgcaacaactaaaccta 15969372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 34988757 - 34988708
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    ||||| |||||||||||| |||||||||||| || || ||||||||||||    
T  34988757 tatcctttactctttaatattattaggtttgcaaaaactaaacctagaaa 34988708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 44229687 - 44229735
Alignment:
Q  173 atcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  44229687 atcctttactctttaatcttattaggtttgcaacaactaaacctagaaa 44229735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 15782981 - 15782932
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaacctagaaa 221  Q
    ||||||||||||||||||||||||||||||| |||||  |||| ||||||    
T  15782981 tatcccttactctttaatcttattaggtttgcaacaacgaaacttagaaa 15782932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 10186119 - 10186080
Alignment:
Q  178 ttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10186119 ttactctttaatcttattaggtttgcaacaattaaaccta 10186080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 7332376 - 7332331
Alignment:
Q  172 tatcccttactctttaatcttattaggtttgaaacaattaaaccta 217  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||    
T  7332376 tatcccttactctttaattttattaggtttgcaacaactaaaccta 7332331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University