View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5673_low_8 (Length: 289)
Name: NF5673_low_8
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5673_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 873481 - 873727
Alignment:
| Q |
1 |
tacctaaagcacccttaatgcaaatctaaaatctcagtttcttctctcttctcctcttctccaccaccttactttcagcgaatttcaacctcaaa-cagg |
99 |
Q |
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| T |
873481 |
tacctaaagtacccttaatgcaaaactaaaatctcagtttcttctctcttctcttcttctccaccaccttactttcagcgaatttcaacctcaaaccagg |
873580 |
T |
|
| Q |
100 |
ggcggacctgacctgggcctagtgtggcaagtgccacaccagcccatgcccaannnnnnnnnnnnnnnnnaaaaaattatgaagaaaacgaccgtatcag |
199 |
Q |
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| T |
873581 |
ggcggacctggcatgggcctagtgtggcaagtgccacaccagcccatgcccaatatatatatattttttt---aaattatgaagaaaacgaacgtatcag |
873677 |
T |
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| Q |
200 |
taaaaacgcgttgcctgcctcttttcatttcattccatcgctcaggatca |
249 |
Q |
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| T |
873678 |
taaaaacgtgttgcctgcctcttttcattccattccattgctcaggatca |
873727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 12287174 - 12287223
Alignment:
| Q |
96 |
caggggcggacctgacctgggcctagtgtggcaagtgccacaccagccca |
145 |
Q |
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| T |
12287174 |
caggggcggacctgacctgggcttagtgtggcaagtgtcacaccagccca |
12287223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 34403841 - 34403891
Alignment:
| Q |
95 |
acaggggcggacctgacctgggcctagtgtggcaagtgccacaccagccca |
145 |
Q |
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| T |
34403841 |
acaggggcggacctgaactaggcccagtgtggcaagtgccacaccagccca |
34403891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 29456329 - 29456357
Alignment:
| Q |
115 |
ggcctagtgtggcaagtgccacaccagcc |
143 |
Q |
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| T |
29456329 |
ggcctagtgtggcaagtgccacaccagcc |
29456357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 8339895 - 8339938
Alignment:
| Q |
102 |
cggacctgacctgggcctagtgtggcaagtgccacaccagccca |
145 |
Q |
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| T |
8339895 |
cggacttgaactaggcctagtgtggcaagtgccacaccagccca |
8339938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 20526382 - 20526410
Alignment:
| Q |
115 |
ggcctagtgtggcaagtgccacaccagcc |
143 |
Q |
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| T |
20526382 |
ggcctagtgtggcaagtgccacaccagcc |
20526410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 27001072 - 27001128
Alignment:
| Q |
96 |
caggggcggacctgacctgggcctagtgtggcaagtgccacaccagcccatgcccaa |
152 |
Q |
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| T |
27001072 |
caggggcggacctggactaggcccggtgtggcaagtgccacaccagtccaggcccaa |
27001128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 41881449 - 41881400
Alignment:
| Q |
96 |
caggggcggacctgacctgggcctagtgtggcaagtgccacaccagccca |
145 |
Q |
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| T |
41881449 |
caggggtggacctgaacaggtcctggtgtggcaagtgccacaccagccca |
41881400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 9366845 - 9366894
Alignment:
| Q |
96 |
caggggcggacctgacctgggcctagtgtggcaagtgccacaccagccca |
145 |
Q |
| |
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|||||||||||||| |||||| || ||||||||| |||||||||||||| |
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| T |
9366845 |
caggggcggacctggcctgggtctgctgtggcaagggccacaccagccca |
9366894 |
T |
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