View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5673_low_9 (Length: 289)

Name: NF5673_low_9
Description: NF5673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5673_low_9
NF5673_low_9
[»] scaffold0180 (1 HSPs)
scaffold0180 (32-238)||(11306-11511)
[»] chr8 (8 HSPs)
chr8 (32-239)||(17857132-17857339)
chr8 (32-238)||(23016602-23016808)
chr8 (98-238)||(23016334-23016474)
chr8 (6-238)||(8366077-8366310)
chr8 (20-233)||(17277384-17277598)
chr8 (6-235)||(17278156-17278385)
chr8 (169-238)||(17277647-17277716)
chr8 (159-238)||(6778289-6778368)
[»] chr2 (8 HSPs)
chr2 (32-238)||(44793316-44793522)
chr2 (98-240)||(44792583-44792725)
chr2 (6-238)||(18535783-18536016)
chr2 (6-238)||(22300377-22300610)
chr2 (6-238)||(24806765-24806999)
chr2 (6-240)||(24808621-24808857)
chr2 (66-238)||(31974034-31974207)
chr2 (120-238)||(22299660-22299779)
[»] chr1 (13 HSPs)
chr1 (37-239)||(40553872-40554074)
chr1 (98-238)||(40554628-40554768)
chr1 (15-240)||(36233276-36233502)
chr1 (15-239)||(36233846-36234071)
chr1 (6-234)||(24157534-24157763)
chr1 (117-238)||(31390119-31390240)
chr1 (17-238)||(20189289-20189511)
chr1 (6-239)||(20190911-20191145)
chr1 (6-240)||(48462774-48463008)
chr1 (23-205)||(48463853-48464035)
chr1 (184-238)||(31390560-31390614)
chr1 (239-280)||(16327716-16327757)
chr1 (40-240)||(20759074-20759273)
[»] scaffold0139 (1 HSPs)
scaffold0139 (29-238)||(4195-4404)
[»] scaffold0002 (1 HSPs)
scaffold0002 (61-241)||(375245-375425)
[»] scaffold0321 (1 HSPs)
scaffold0321 (32-238)||(5190-5396)
[»] chr3 (9 HSPs)
chr3 (6-240)||(23460170-23460405)
chr3 (6-238)||(5554272-5554505)
chr3 (6-238)||(16346604-16346837)
chr3 (6-238)||(47418457-47418690)
chr3 (15-238)||(5553168-5553392)
chr3 (6-238)||(25531606-25531839)
chr3 (6-240)||(16022633-16022868)
chr3 (29-238)||(47566446-47566657)
chr3 (15-88)||(32570600-32570673)
[»] chr4 (13 HSPs)
chr4 (32-240)||(11098467-11098677)
chr4 (32-239)||(42872936-42873143)
chr4 (75-242)||(18281296-18281463)
chr4 (15-238)||(15018130-15018354)
chr4 (15-238)||(15019770-15019994)
chr4 (6-239)||(13518441-13518675)
chr4 (6-238)||(9399100-9399333)
chr4 (75-238)||(21377171-21377334)
chr4 (17-239)||(39488642-39488865)
chr4 (32-239)||(22473648-22473855)
chr4 (23-237)||(13517922-13518137)
chr4 (103-187)||(19455904-19455989)
chr4 (103-198)||(24663997-24664095)
[»] chr7 (9 HSPs)
chr7 (6-238)||(40998700-40998933)
chr7 (6-239)||(9647416-9647650)
chr7 (6-239)||(23446631-23446865)
chr7 (6-238)||(41000559-41000793)
chr7 (6-235)||(7842649-7842879)
chr7 (6-237)||(9595917-9596149)
chr7 (6-237)||(9646880-9647112)
chr7 (159-238)||(24790092-24790170)
chr7 (159-238)||(24790151-24790229)
[»] chr5 (9 HSPs)
chr5 (15-238)||(244928-245152)
chr5 (6-219)||(29949576-29949790)
chr5 (6-219)||(29951214-29951428)
chr5 (136-239)||(21352698-21352802)
chr5 (120-239)||(38936686-38936806)
chr5 (103-190)||(23660939-23661027)
chr5 (103-190)||(23797543-23797631)
chr5 (15-238)||(16780582-16780804)
chr5 (145-208)||(21352606-21352670)
[»] scaffold0094 (1 HSPs)
scaffold0094 (32-236)||(13406-13610)
[»] scaffold0025 (1 HSPs)
scaffold0025 (6-238)||(54826-55060)
[»] scaffold0018 (1 HSPs)
scaffold0018 (6-240)||(565-801)
[»] scaffold0146 (1 HSPs)
scaffold0146 (38-238)||(31561-31762)
[»] scaffold0013 (1 HSPs)
scaffold0013 (6-236)||(241018-241249)
[»] scaffold0026 (2 HSPs)
scaffold0026 (6-238)||(86553-86782)
scaffold0026 (136-239)||(673-777)
[»] scaffold0096 (1 HSPs)
scaffold0096 (98-236)||(22371-22510)
[»] scaffold0269 (2 HSPs)
scaffold0269 (6-76)||(1884-1954)
scaffold0269 (120-238)||(1964-2081)
[»] scaffold0021 (2 HSPs)
scaffold0021 (98-238)||(17627-17768)
scaffold0021 (98-238)||(27158-27299)
[»] chr6 (2 HSPs)
chr6 (169-240)||(12037064-12037135)
chr6 (171-238)||(12036986-12037053)


Alignment Details
Target: scaffold0180 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 11306 - 11511
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  11306 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttgcagagctctagatatgatgaatacaagacagat 11404  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  11405 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattcca-aatgactttaatattcttgtaaagggagaacatcttagga 11503  T
Q  231 tcacatca 238  Q
    ||||||||    
T  11504 tcacatca 11511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 17857339 - 17857132
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||    
T  17857339 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctctagatatgatgaatacaagacagat 17857241  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  17857240 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttagga 17857141  T
Q  231 tcacatcac 239  Q
    |||||||||    
T  17857140 tcacatcac 17857132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 23016602 - 23016808
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | ||| ||||||||||  ||||||||||| ||||||||||||  ||||||||||||||    
T  23016602 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaatatcacctcaattggagttgcagaactctagatatgatgaatacaagacagat 23016700  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  23016701 acataatgacctacgaaaataacaatttgaaccaaaaataatttgatttttttattccataacgactttaatattcttgtaaagggagaacatcttagga 23016800  T
Q  231 tcacatca 238  Q
    ||||||||    
T  23016801 tcacatca 23016808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 23016334 - 23016474
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 197  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23016334 cagagctctagatatgatgaatacaagacaaatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgact 23016433  T
Q  198 ttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  23016434 ttaatattcttgtaaagggagaacatcttaggatcacatca 23016474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 8366310 - 8366077
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||  | ||||||||    
T  8366310 aatattccgaatttgctcttgagtcaaatagataaaatgtagagaattccgtaagctttcaaacgagttaaagatcacctcaaacggacatccagagctc 8366211  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     | ||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||||| |||| |||    
T  8366210 caaatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattat 8366111  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||| ||||  || ||||||||||||||    
T  8366110 tcttgtcaagagagagaattttaggatcacatca 8366077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 17277598 - 17277384
Alignment:
Q  20 gctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaat 119  Q
    |||| ||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  | |||||||| ||||||  | ||     
T  17277598 gctcctgagtcaaacagacgaaatgtagagaattccgtaagctttccaatgagttaaagatcacctcaaacggacatccagagctccagatatagccaaa 17277499  T
Q  120 acaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgag 218  Q
    |||||||| | | || ||||||||| ||||||| | |||||| |||||  ||||||||||||||||||||| |||||||||| ||||||||| ||| |||    
T  17277498 acaagacatacatatcatgacctacaaaaataaaactttgaacccaaaattaatttgattcttttattccacaatgactttattattcttgtcaagagag 17277399  T
Q  219 aacatcttaggatca 233  Q
    |  || |||||||||    
T  17277398 agaattttaggatca 17277384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 17278156 - 17278385
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||| |||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  |  |||||||    
T  17278156 aatattccgaatttgcttttgagtcaaacagacgaaatgtagaaaatttcgtaagctttccaatgagttaaagatcacctcaaacggacatctagagctc 17278255  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatatt 205  Q
     ||||||  | || |||||||||| | || ||||| |||||||||||   || || |||||  ||||||| ||||||||||||| |||||||||| ||||    
T  17278256 cagatatagccaaaacaagacagacatatcatgacttacgaaaataaactttggacccaaaattaatttggttcttttattccacaatgactttattatt 17278355  T
Q  206 cttgtaaagtgagaacatcttaggatcaca 235  Q
    ||||| ||| ||||  || |||||||||||    
T  17278356 cttgtcaagagagagaattttaggatcaca 17278385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 17277716 - 17277647
Alignment:
Q  169 taatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||| ||||  |  ||||||||||||||    
T  17277716 taatttggttcttttattccataatgactttattattcttgtcaagagagagaaatttaggatcacatca 17277647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 6778289 - 6778368
Alignment:
Q  159 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||||  ||||| | ||||||||||||| ||| |||||| ||||||||||||| ||||  || ||||||||||||||    
T  6778289 gaaccaaaattaattcggttcttttattccacaataactttattattcttgtaaagggagagaattttaggatcacatca 6778368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 44793316 - 44793522
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||    
T  44793316 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctctagatatgatgaatacaagacagat 44793414  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  44793415 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttagga 44793514  T
Q  231 tcacatca 238  Q
    ||||||||    
T  44793515 tcacatca 44793522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 44792725 - 44792583
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 197  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  44792725 cagagctctagatatgatgaatacaagacagatacataatgacctacaaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 44792626  T
Q  198 ttaatattcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    ||| ||||||||||||| |||||||||||||||||||||||||    
T  44792625 ttattattcttgtaaagggagaacatcttaggatcacatcaca 44792583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 18535783 - 18536016
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  18535783 aatattccgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 18535882  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  18535883 cagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattat 18535982  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||| | ||| ||||  || ||||||||||||||    
T  18535983 tcttttcaagagagagaatattaggatcacatca 18536016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 22300377 - 22300610
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  | ||||||||    
T  22300377 aatattccgaatttgctcttgagtcaaacagatgaaatgtagagaattccgtaagctttccaacaagttaaagatcacctcaaacggacatccagagctc 22300476  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
      |||||  |||| |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||||| |||| |||    
T  22300477 cggatatagcaaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattat 22300576  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||| ||||  || ||||||||||||||    
T  22300577 tcttgtcaagagagagaattttaggatcacatca 22300610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 24806765 - 24806999
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||    
T  24806765 aatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccggagctc 24806864  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgac-tttaata 203  Q
     ||||||  | || |||||||||| | || ||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||| |||| ||    
T  24806865 cagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttatta 24806964  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||| ||| ||||  || ||||||||||||||    
T  24806965 ttcttgtcaagagagagaattttaggatcacatca 24806999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 24808621 - 24808857
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  | | ||||||    
T  24808621 aatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatccggagctc 24808720  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactt-taata 203  Q
     ||||||  | || |||||||||| | || ||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||| || ||    
T  24808721 cagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctatta 24808820  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    ||||||| ||| ||||  || ||||||||||||||||    
T  24808821 ttcttgtcaagagagagaattttaggatcacatcaca 24808857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 31974034 - 31974207
Alignment:
Q  66 caacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaa 165  Q
    ||||||||||||||||||||||||||||  | |||| |||  |||||  | || |||||||| | | || ||||||||||||||||| | |||||||| |    
T  31974034 caacgagttaaagatcacctcaaacggacatccagaactcccgatatagccaaaacaagacaaacatatcatgacctacgaaaataaaactttgaaccca 31974133  T
Q  166 atat-aatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    | || |||| | |||||||||||||||||||||||| ||||||| | ||| ||||  || ||||||||||||||    
T  31974134 aaattaattaggttcttttattccataatgactttattattcttttcaagagagagaattttaggatcacatca 31974207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 22299779 - 22299660
Alignment:
Q  120 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagtgag 218  Q
    |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| ||||| |||| ||||||||| ||| |||    
T  22299779 acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgaatttattattcttgtcaagagag 22299680  T
Q  219 aacatcttaggatcacatca 238  Q
    |  || ||||||||||||||    
T  22299679 agaattttaggatcacatca 22299660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 40554074 - 40553872
Alignment:
Q  37 atgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacata 135  Q
    |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||    
T  40554074 atgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctctagatatgatgaatacaagacagatacata 40553976  T
Q  136 atgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcaca 235  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  40553975 atgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcaca 40553876  T
Q  236 tcac 239  Q
    ||||    
T  40553875 tcac 40553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 40554628 - 40554768
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgact 197  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  40554628 cagagctctagatatgatgaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaat 40554727  T
Q  198 ttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||| ||||||||||||| |||||||||||||||||||||||    
T  40554728 ttattattcttgtaaagggagaacatcttaggatcacatca 40554768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 36233502 - 36233276
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||| ||||||      
T  36233502 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatatag 36233403  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| ||    
T  36233402 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 36233303  T
Q  214 gtgagaacatcttaggatcacatcaca 240  Q
    | ||||  || ||||||||||||||||    
T  36233302 gagagataattttaggatcacatcaca 36233276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 36233846 - 36234071
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||| ||||||      
T  36233846 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcgcctcaaacggacatccagagctccagatatag 36233945  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| ||    
T  36233946 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 36234045  T
Q  214 gtgagaacatcttaggatcacatcac 239  Q
    | ||||  || |||||||||||||||    
T  36234046 gagagataattttaggatcacatcac 36234071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 24157534 - 24157763
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  24157534 aatattccgaattttctcttgagttaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 24157633  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||| | |||||||||||||||||||||||| |||    
T  24157634 cagatatagctaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattat 24157733  T
Q  205 tcttgtaaagtgagaacatcttaggatcac 234  Q
    |||| | ||| ||||  || ||||||||||    
T  24157734 tcttttcaagagagagaattttaggatcac 24157763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 31390240 - 31390119
Alignment:
Q  117 aatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  31390240 aatacaagacagatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaaggg 31390141  T
Q  217 agaacatcttaggatcacatca 238  Q
    ||||||||||||||||||||||    
T  31390140 agaacatcttaggatcacatca 31390119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 20189289 - 20189511
Alignment:
Q  17 tttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgaca 116  Q
    ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||  | |||| ||| ||||||  |     
T  20189289 tttgctcttgagtcaaacagatgaaatgtagagaattttgtaaactttccaacaagttgaagatcacctcaaacggacatccagaactccagatatagcc 20189388  T
Q  117 aatacaagacagatacataatgacctacgaaaataacaatttg-aaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagt 215  Q
    || |||||||||| | || ||||||||||||||||| | |||| |||||||  ||||||| ||||||||||||| |||||||||| |||| || | |||     
T  20189389 aaaacaagacagacatatcatgacctacgaaaataaaactttgaaaccaaaattaatttggttcttttattccacaatgactttattatttttttcaaga 20189488  T
Q  216 gagaacatcttaggatcacatca 238  Q
    ||||  || ||||||||||||||    
T  20189489 gagagaattttaggatcacatca 20189511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 20190911 - 20191145
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||  | || |||||    
T  20190911 aatattccgaatttgctcttgagtcaaacagatgaaatgtagataatttagtaagctttccaaagagttaaagatcacctcaaacggacatccaaagctc 20191010  T
Q  106 tagatat-gacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaata 203  Q
     |||||| | |||| |||||||||| | || ||||| ||||||||||| | |||||| |||||  ||||| | ||||||||||| |||||||||||| ||    
T  20191011 cagatatagtcaaa-acaagacagacatatcatgacatacgaaaataaaactttgaacccaaaattaattaggttcttttattctataatgactttatta 20191109  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatcac 239  Q
    ||||| | ||| ||||  || ||||| |||||||||    
T  20191110 ttcttttcaagagagataattttaggttcacatcac 20191145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 48463008 - 48462774
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||||    
T  48463008 aatattccgaatttgctcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacatcaaacggatatccagagctc 48462909  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     | ||||  | || |||||||| | | || ||||||||| ||||||| | |||||| | |||  ||||||||||||||| || |  |||||||||| |||    
T  48462908 caaatatagccaaaacaagacatacatatcatgacctacaaaaataaaactttgaatctaaaattaatttgattctttt-tttcgcaatgactttattat 48462810  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    |||| | ||| || |  || ||||||||||||||||    
T  48462809 tcttctcaagagacagaattttaggatcacatcaca 48462774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 48463853 - 48464035
Alignment:
Q  23 cttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaataca 122  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||  | || |||    
T  48463853 cttgagtcaaacagatgaaatgtaaagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaaca 48463952  T
Q  123 agacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatatt 205  Q
    ||||||| | || ||||||||| ||||||| |||||||| |||||  || |||| ||||||||||||| ||| |||||| ||||    
T  48463953 agacagacatatcatgacctacaaaaataa-aatttgaacccaaaattattttggttcttttattccacaataactttattatt 48464035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 31390560 - 31390614
Alignment:
Q  184 attccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  31390560 attccataatgaatttattattcttgtaaagggagaacatcttaggatcacatca 31390614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 16327757 - 16327716
Alignment:
Q  239 cactggtttgggtagttggttgaggttaagatgatgatgatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16327757 cactggtttgggtagttggttgaggttaagatgatgatgatg 16327716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 20759273 - 20759074
Alignment:
Q  40 aaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc--tagatatgacaaatacaagacagatacataat 137  Q
    ||||||||||||||| |||| |||||||  |||| |||||| ||||||  ||||  | |||| |||  || ||||  | || |||||||| | | || ||    
T  20759273 aaatgtagagaattttgtaaactttccatagagtaaaagattacctcactcggacatccagaactccatatatatagccaaaacaagacatacatatcat 20759174  T
Q  138 gacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatc 237  Q
    ||||||||||||||| | |||||||||||  ||||||| |||||   || || |||||||||| ||||||||| ||| ||||  || |||||||||||||    
T  20759173 gacctacgaaaataaaactttgaaccaaaattaatttggttctt---tttcacaatgactttattattcttgtcaagggagagaattttaggatcacatc 20759077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 4404 - 4195
Alignment:
Q  29 tcaaacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagaca 127  Q
    ||||||| |||||||||||| |||||| |||  ||||| ||||  |||||||||||||||| |||||||| ||||||||| ||||||  ||||||| |||    
T  4404 tcaaacatatgaaatgtagatgaattt-gtaccctttcgaacgctttaaagatcacctcaatcggagttgtagagctctaaatatgatgaatacaataca 4306  T
Q  128 gatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatctta 227  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  4305 gatacataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgactttattattcttgtaaagggagaacatctta 4206  T
Q  228 ggatcacatca 238  Q
    |||||||||||    
T  4205 ggatcacatca 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 375245 - 375425
Alignment:
Q  61 ctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttga 160  Q
    ||||||||||  | |||||||||||||| | ||||| |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  375245 ctttccaacgcttcaaagatcacctcaatcagagttccagagctctagatatgaggaatacaagacagatacataatgacctacaaaaataacaatttga 375344  T
Q  161 accaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatcacac 241  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||    
T  375345 accaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttaggatcacatcacac 375425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 5396 - 5190
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| ||||| |||||||||||  ||||||||||| ||    
T  5396 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagttctagatatgatgaatacaagacacat 5298  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  5297 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttagga 5198  T
Q  231 tcacatca 238  Q
    ||||||||    
T  5197 tcacatca 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 23460405 - 23460170
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  23460405 aatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggatatccagagctc 23460306  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | |||||||||||||||||||| | |||||| |||||  ||||||| ||||||||||| | |||||||||| |||    
T  23460305 cagatatagccaaaacaagacagacatataatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattctacaatgactttattat 23460206  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    |||||| ||| ||||  || ||||||||||||||||    
T  23460205 tcttgtcaagagagagaattttaggatcacatcaca 23460170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 5554272 - 5554505
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||    
T  5554272 aatattccgaatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctatccaacgagttaaagatcacctcaaacggacatccagagctc 5554371  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  5554372 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattat 5554471  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||| ||||  || ||||||||||||||    
T  5554472 tcttgtcaagagagagaattttaggatcacatca 5554505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 16346837 - 16346604
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  16346837 aatattctgaatttgctcttgactcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 16346738  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  16346737 cagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattat 16346638  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||| |  || ||||  || ||||||||||||||    
T  16346637 tcttttccagagagagaatattaggatcacatca 16346604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 47418457 - 47418690
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  47418457 aatattctgaatttgctcttgactcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 47418556  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  47418557 cagatatagccaaaacaagacagacatatcatgacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattat 47418656  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||| | ||| ||||  || ||||||||||||||    
T  47418657 tcttttcaagagagagaatattaggatcacatca 47418690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 5553392 - 5553168
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||      
T  5553392 aatttgctcttgaattaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 5553293  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||| ||| | || ||||||||||||||||| | |||||| |||||  ||||||| |||||||||| || |||||||||| ||||||||| ||    
T  5553292 ccaaaacaagatagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttatttcacaatgactttattattcttgtcaa 5553193  T
Q  214 gtgagaacatcttaggatcacatca 238  Q
    | ||||  || ||||||||||||||    
T  5553192 gagagagaattttaggatcacatca 5553168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 25531839 - 25531606
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||  | ||||||||    
T  25531839 aatattctgaatttgctcttaagtcaaacagatgaaatgtagagaattccataagctttccaacgagttaaagatcacctcaaacggacatccagagctc 25531740  T
Q  106 tagatat-gacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaata 203  Q
     |||||| | |||| |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||| ||| | ||||| |||| ||    
T  25531739 cagatatagtcaaa-acaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttctttttttctacaatgaatttatta 25531641  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||| ||| ||||  || ||||||||||||||    
T  25531640 ttcttgtcaagagagagaattttaggatcacatca 25531606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 16022633 - 16022868
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||  | |||||||     
T  16022633 aatattccgaatttgatcttgagtcaaacagacgaaatgtagagaacttcgtaagctttccaacgagttaaagaccacctcaaacggacatccagagctt 16022732  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaattt-gaaccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | ||| || |||||  ||||||| ||||||||||||| |||||||||| |||    
T  16022733 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttggacccaaaattaatttggttcttttattccacaatgactttattat 16022832  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    |||||| ||  || |  || ||||||||||||||||    
T  16022833 tcttgtcaaaagatataatattaggatcacatcaca 16022868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 47566657 - 47566446
Alignment:
Q  29 tcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagac-- 126  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||| || |  | || ||||| ||||||  | || |||||||      
T  47566657 tcaaacagacgaaatgtaaagaattttgtaagctttccaacgaattaaagatcacctcaatcgaacatccatagctccagatatagccaagacaagacaa 47566558  T
Q  127 agatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatctt 226  Q
    | ||| || |||| |||||||||||| | ||| || ||||  ||| |  |||||||||||||| |||||||||| ||||||||| |||  |||  || ||    
T  47566557 acatatatcatgatctacgaaaataaaattttaaatcaaaattaaatcaattcttttattccacaatgactttattattcttgtcaagaaagagaatttt 47566458  T
Q  227 aggatcacatca 238  Q
    ||||||||||||    
T  47566457 aggatcacatca 47566446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 32570673 - 32570600
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaa 88  Q
    |||||||||| || ||||||| |  ||||||||| ||||| |||||||||||||||| ||||||||||||||||    
T  32570673 aatttgctctcgagtcaaacatacaaaatgtagataattttgtaagctttccaacgaattaaagatcacctcaa 32570600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 11098677 - 11098467
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||    
T  11098677 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttccagagctctagatatgatgaatacaagacagat 11098579  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaata--taatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttag 228  Q
    |||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  11098578 acataatgacctacgaaaataacaatttgaaccaaaaaataaatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttag 11098479  T
Q  229 gatcacatcaca 240  Q
    ||||||||||||    
T  11098478 gatcacatcaca 11098467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 42872936 - 42873143
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| |||  || |||||||||||||||||  ||||||||||| ||    
T  42872936 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcgggattccagagctctagatatgatgaatacaagacatat 42873034  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  42873035 acataatgacctacgaaaataacaatttgaaccaaaaataatttgattcttttattccataatgaatttattattcttgtaaagggagaacatcttagga 42873134  T
Q  231 tcacatcac 239  Q
    |||||||||    
T  42873135 tcacatcac 42873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 18281296 - 18281463
Alignment:
Q  75 aaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataattt 174  Q
    ||||||||||| || |||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  18281296 aaagatcacctaaatcggagttgtagagctctagatatgatgaatgcaagacagatacataatgacctacgaaaataactatttgaaccaaaaataattt 18281395  T
Q  175 gattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatcacact 242  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  18281396 gattcttttattcgataatgactttattattcttgtaaagggagaacatcttaggatcacatgacact 18281463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 15018130 - 15018354
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||      
T  15018130 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 15018229  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| ||    
T  15018230 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 15018329  T
Q  214 gtgagaacatcttaggatcacatca 238  Q
    | ||||  || ||||||||||||||    
T  15018330 gagagataattttaggatcacatca 15018354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 15019770 - 15019994
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||      
T  15019770 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 15019869  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| ||    
T  15019870 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 15019969  T
Q  214 gtgagaacatcttaggatcacatca 238  Q
    | ||||  || ||||||||||||||    
T  15019970 gagagataattttaggatcacatca 15019994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 13518441 - 13518675
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||    
T  13518441 aatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagctc 13518540  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  13518541 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 13518640  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcac 239  Q
    |||||| ||| ||||  || |||||||||||||||    
T  13518641 tcttgtcaagagagagaattttaggatcacatcac 13518675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 9399100 - 9399333
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  9399100 aatattccgaatttgctcttgagtcaaacagacgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 9399199  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     | ||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  9399200 catatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 9399299  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||| ||||  || ||||||||||||||    
T  9399300 tcttgtcaagagagataattttaggatcacatca 9399333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 21377334 - 21377171
Alignment:
Q  75 aaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataattt 174  Q
    |||||||||||||| | |||||||| ||||||||||||||  |||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||||    
T  21377334 aaagatcacctcaatcagagttgcaaagctctagatatgatgaatataagacagatacataatgacctacgaaaataaaaatctgaaccaaaaataattt 21377235  T
Q  175 gattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    | ||||||||||||||| |||||||| ||||||||| ||| ||||| ||||||||||| |||||    
T  21377234 ggttcttttattccatattgactttattattcttgtcaagggagaatatcttaggatcgcatca 21377171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 39488642 - 39488865
Alignment:
Q  17 tttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgaca 116  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||| ||||||  |     
T  39488642 tttgctcttgagtcaaacagatgaattgtggagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatctagagctccagatatagcc 39488741  T
Q  117 aatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagt 215  Q
    || | |||||||| | || ||||||||||||||||| | |||||| |||||  ||||| | ||||||||||||||||||| |||| ||||||| | |||     
T  39488742 aaaataagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgaatttattattcttttcaaga 39488841  T
Q  216 gagaacatcttaggatcacatcac 239  Q
    ||||  || |||||||||||||||    
T  39488842 gagagaattttaggatcacatcac 39488865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 22473855 - 22473648
Alignment:
Q  32 aacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatc-acctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| ||||| |||   |||||||||  | ||||||| ||||||| | |||||||||||||||| ||||||  ||||||| ||| ||    
T  22473855 aacatatgaaatgtagataattttgtaccatttccaacgcttcaaagatccacctcaatcagagttgcagagctctaaatatgatgaatacaacacatat 22473756  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    ||||||||||| |||||||||||||||||||||||| | || ||| |||||||||||||||||||||||| ||||| ||| |||  | ||||||||||||    
T  22473755 acataatgaccaacgaaaataacaatttgaaccaaa-aaaaattggttcttttattccataatgactttattattcatgtcaaggaataacatcttagga 22473657  T
Q  231 tcacatcac 239  Q
    || ||||||    
T  22473656 tcgcatcac 22473648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 13517922 - 13518137
Alignment:
Q  23 cttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaataca 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |    ||||| ||| ||  | || |||    
T  13517922 cttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctccagacatagccaaaaca 13518021  T
Q  123 agacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaac 221  Q
    ||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |||| |||| ||| ||||      
T  13518022 agacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattattattgtcaagagagaga 13518121  T
Q  222 atcttaggatcacatc 237  Q
    || |||||||||||||    
T  13518122 attttaggatcacatc 13518137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 19455989 - 19455904
Alignment:
Q  103 ctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattc-ttttattc 187  Q
    |||||||||||||||| |||| ||||| | ||||| |||||| ||||||||| ||  |||||||  ||||||| ||| ||||||||    
T  19455989 ctctagatatgacaaaaacaaaacagacatataatcacctacaaaaataacacttgaaaccaaaattaatttggttcattttattc 19455904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 24663997 - 24664095
Alignment:
Q  103 ctctagatatg-acaaatacaagacagatacataatgaccta--cgaaaataacaa-tttgaaccaaatataatttgattcttttattccataatgactt 198  Q
    ||||||||||| ||||| |||||||||||| ||||||| |||  |||| |||| || ||||||||||| |||||||| |||| |||| ||||||| ||||    
T  24663997 ctctagatatggacaaa-acaagacagatatataatgatctatacgaatataaaaactttgaaccaaaaataatttggttctcttatgccataataactt 24664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 40998700 - 40998933
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  40998700 aatattaagaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 40998799  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || | |||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  40998800 cagatatagccaaaataagacagacatatcatgacctacgaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttattat 40998899  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||| ||||  || ||||||||||||||    
T  40998900 tcttgtcaagagagagaattttaggatcacatca 40998933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 9647416 - 9647650
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||    
T  9647416 aatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagttttccaacgagttaaagatcacctcaaacggacatccagagctc 9647515  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  9647516 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 9647615  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcac 239  Q
    |||||| ||| ||||  || |||||||||||||||    
T  9647616 tcttgtcaagagagagaattttaggatcacatcac 9647650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 23446865 - 23446631
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  23446865 aatattccgaatttgctcttgactcaaacagatgaaatgtagagaatttggtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 23446766  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  23446765 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 23446666  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatcac 239  Q
    |||| | ||| ||||  || |||||||||||||||    
T  23446665 tcttttcaagagagagaatattaggatcacatcac 23446631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 41000559 - 41000793
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  | ||||||||    
T  41000559 aatattaagaatttgctcttgaatcaaacagatgaaatgtagagaatttcgcaagctttccaacgagttagagatcacctcaaacggacatccagagctc 41000658  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacg-aaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaata 203  Q
     ||||||  | || ||||||| || | || |||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||    
T  41000659 cagatatagccaaaacaagaccgacatatcatgacctacgaaaaataaaattttgaacccaaaattaatttggttcttttattccacaatgactttatta 41000758  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||| ||| ||||  || ||||||||||||||    
T  41000759 ttcttgtcaagagagagaattttaggatcacatca 41000793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 7842879 - 7842649
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||| ||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  7842879 aatattccgaatttgcacttgagtcaaacggatgaattgtatagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 7842780  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
    ||||||| || || |||| ||||| | ||  |||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  7842779 tagatataaccaaaacaaaacagacatatcttgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 7842680  T
Q  205 tcttgtaaagtgagaacatcttaggatcaca 235  Q
    |||||| ||| ||||  || |||||||||||    
T  7842679 tcttgtcaagagagagaattttaggatcaca 7842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 9595917 - 9596149
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |   ||||||    
T  9595917 aatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcgggagctc 9596016  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||| ||  | || |||||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |||    
T  9596017 cagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattat 9596116  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatc 237  Q
    | |||| ||| ||||  || |||||||||||||    
T  9596117 tattgtcaagagagagaattttaggatcacatc 9596149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 9646880 - 9647112
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |    |||||    
T  9646880 aatattccgaatttgcacttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacgaacatcggaagctc 9646979  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||| ||  | || |||||||||| | || |||| |||||||||||| | |||||| |||||  ||||||| ||||||||||||| ||| |||||| |||    
T  9646980 cagacatagccaaaacaagacagacatatcatgatctacgaaaataaaactttgaacccaaagttaatttggttcttttattccacaataactttattat 9647079  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatc 237  Q
    | |||| ||| ||||  || |||||||||||||    
T  9647080 tattgtcaagagagagaattttaggatcacatc 9647112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 24790170 - 24790092
Alignment:
Q  159 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  24790170 gaaccaaat-taatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatca 24790092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 24790151 - 24790229
Alignment:
Q  159 gaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  24790151 gaaccaaat-taatttggttcttttattccacaatgactttattattcttgtcaagagagataattttaggatcacatca 24790229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 244928 - 245152
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||      
T  244928 aatttgatcttgagtcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatag 245027  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaa 213  Q
    | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||||| ||    
T  245028 ccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttgtcaa 245127  T
Q  214 gtgagaacatcttaggatcacatca 238  Q
    | ||||  || ||||||||||||||    
T  245128 gagagataattttaggatcacatca 245152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 29949790 - 29949576
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  29949790 aatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 29949691  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  29949690 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 29949591  T
Q  205 tcttgtaaagtgaga 219  Q
    |||||| ||| ||||    
T  29949590 tcttgtcaagagaga 29949576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 29951428 - 29951214
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  29951428 aatattccgaatttgatcttgaatcaaatagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 29951329  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| |||    
T  29951328 cagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgactttattat 29951229  T
Q  205 tcttgtaaagtgaga 219  Q
    |||||| ||| ||||    
T  29951228 tcttgtcaagagaga 29951214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 21352698 - 21352802
Alignment:
Q  136 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcac 234  Q
    ||||||||||||||||| | |||||||| || || |||| | |||||||||||||||||||||||| ||||||| | ||| ||||  || ||||||||||    
T  21352698 atgacctacgaaaataaaactttgaacccaaaattaattaggttcttttattccataatgactttattattcttttcaagagagagaattttaggatcac 21352797  T
Q  235 atcac 239  Q
    |||||    
T  21352798 atcac 21352802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 38936806 - 38936686
Alignment:
Q  120 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatata-atttgattcttttattccataatgactttaatattcttgtaaagtgag 218  Q
    |||||||||| | || ||||||||||||||||| | |||||||| || ||  ||||| |||||||||| || |||||||||| ||||||||| ||| |||    
T  38936806 acaagacagacatatcatgacctacgaaaataaaattttgaacccaaaattgatttggttcttttatttcacaatgactttattattcttgtcaagagag 38936707  T
Q  219 aacatcttaggatcacatcac 239  Q
    |  || |||||||||||||||    
T  38936706 agaattttaggatcacatcac 38936686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 23661027 - 23660939
Alignment:
Q  103 ctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattc-ttttattccat 190  Q
    |||||||||||||||| |||||||||  | ||||| |||||||||||||| | ||  |||||||  ||||||| ||| |||||||||||    
T  23661027 ctctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccat 23660939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 23797543 - 23797631
Alignment:
Q  103 ctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattc-ttttattccat 190  Q
    |||||||||||||||| |||||||||  | ||||| |||||||||||||| | ||  |||||||  ||||||| ||| |||||||||||    
T  23797543 ctctagatatgacaaaaacaagacagtcatataatcacctacgaaaataatacttgaaaccaaaattaatttggttcattttattccat 23797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 16780804 - 16780582
Alignment:
Q  15 aatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatga 114  Q
    |||||| |||||| | ||||||| |||||| ||| || ||  |||| ||||||| || | ||||||| |||||| ||||  | ||||  ||  |||||      
T  16780804 aatttgttcttgagttaaacagacgaaatgcagataactttctaagatttccaaggactcaaagatcgcctcaatcggacatccagaattccggatatag 16780705  T
Q  115 caaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaag 214  Q
    | || |||||||| | |||| |||| |||||||||||| |  ||||||||||  |||||  ||||||||||| || |||||||||| |||| || | |||    
T  16780704 ccaaaacaagacaaacacatcatgaactacgaaaataaaacattgaaccaaaattaattcaattcttttatt-cacaatgactttattatttttatcaag 16780606  T
Q  215 tgagaacatcttaggatcacatca 238  Q
     ||||  || ||||||||||||||    
T  16780605 agagagaattttaggatcacatca 16780582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 21352670 - 21352606
Alignment:
Q  145 gaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattctt 208  Q
    |||||||| | |||||| |||||  ||||| | |||||||||||||||||||||||| |||||||    
T  21352670 gaaaataaaactttgaatccaaaattaattaggttcttttattccataatgactttattattctt 21352606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 13406 - 13610
Alignment:
Q  32 aacagatgaaatgtaga-gaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagat 130  Q
    |||| |||||||||||| |||||| |||  ||||||||||  | |||||||||||||| |||||||| ||||||||||||||||  ||||||| ||||||    
T  13406 aacatatgaaatgtagatgaattt-gtaccctttccaacgcttcaaagatcacctcaatcggagttgtagagctctagatatgatgaatacaaaacagat 13504  T
Q  131 acataatgacctacgaaaataacaatttgaaccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttagga 230  Q
    |||||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  13505 acataatgacctacgaaaataaaaatttgaacccaaaataatttggttcttttattccataatgactttattattcttgtcaagggagaatatcttagga 13604  T
Q  231 tcacat 236  Q
    ||||||    
T  13605 tcacat 13610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 55060 - 54826
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  55060 aatattccgaatttgctcttgaatcaaacagatgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctc 54961  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgac-tttaata 203  Q
     ||||||  | || |||||||||| | |  ||||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||| |||| ||    
T  54960 cagatatagcgaaaacaagacagacatagcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttttatta 54861  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||||| ||| ||||  |  ||||||||||||||    
T  54860 ttcttgtcaagagagagaactttaggatcacatca 54826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 565 - 801
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  | | ||||||    
T  565 aatattccgaatttgctcttggatcaaacagatgaaatgtagagaatttcgtaagctttccaatgagttaaagatcacctgaaacggacatccggagctc 664  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactt-taata 203  Q
     ||||||  | || |||||||||| | || ||||||||| ||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||| || ||    
T  665 cagatatagccaaaacaagacagacatatcatgacctacaaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacttctatta 764  T
Q  204 ttcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    ||||||| ||| ||||  || ||||||||||||||||    
T  765 ttcttgtcaagagagagaattttaggatcacatcaca 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 31762 - 31561
Alignment:
Q  38 tgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctctagatatgacaaatacaagacagatacataat 137  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||| ||||||  | || |||||||||| | || ||    
T  31762 tgaaatgtagagaattttgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctccagatatagccaaaacaagacagacatatcat 31663  T
Q  138 gacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacat 236  Q
    ||||||||||||||| | |||||| |||||  ||||||| ||||||||||||| |||||||||| ||||||| | ||| ||||  || ||||||||||||    
T  31662 gacctacgaaaataagactttgaacccaaaattaatttggttcttttattccacaatgactttattattcttttcaagagagagaatattaggatcacat 31563  T
Q  237 ca 238  Q
    ||    
T  31562 ca 31561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 241249 - 241018
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||||||     
T  241249 aatattccgaatttgctcctgagtcaaaaagacgaaatgtagagaacttcgtaagctttccaacgagttaaagatcacctcaaacggacatccagagctt 241150  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     ||||||  | || |||||||||| | || ||||||||||||||||| | ||| || |||||  ||||||| |||||||||||   |||||||||| |||    
T  241149 cagatatagccaaaacaagacagacatattatgacctacgaaaataaaactttaaacccaaaattaatttggttcttttattctgcaatgactttattat 241050  T
Q  205 tcttgtaaagtgagaacatcttaggatcacat 236  Q
    |||||| ||| ||||  || ||||||||||||    
T  241049 tcttgttaagagagagaattttaggatcacat 241018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 86782 - 86553
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaaagatcacctcaaacggagttgcagagctc 105  Q
    |||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |   ||||||    
T  86782 aatattccgaatttgctcttgagtcaaacagatgaaatttagagaatttcgtaagctttcaaacgagttaaagatcacctcaaacggacatcaggagctc 86683  T
Q  106 tagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaa-ccaaatataatttgattcttttattccataatgactttaatat 204  Q
     | ||||  | || |||||  ||||  || ||||||||| ||||||| |  ||||| |||||  ||||||| ||| ||||||||| |||||||||| |||    
T  86682 catatatagccaaaacaag--agat--atcatgacctacaaaaataaaacattgaacccaaaattaatttggttcctttattccacaatgactttattat 86587  T
Q  205 tcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||||| ||  ||||  || ||||||||||||||    
T  86586 tcttgtcaaaagagagaattttaggatcacatca 86553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 673 - 777
Alignment:
Q  136 atgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcac 234  Q
    ||||||||||||||||| | |||||||| || || ||||||||||||||||| |  |||||||||| ||||||||| ||| ||||  || ||||||||||    
T  673 atgacctacgaaaataaaactttgaacccaaaattaatttgattcttttatttctcaatgactttattattcttgtcaagagagagaattttaggatcac 772  T
Q  235 atcac 239  Q
    |||||    
T  773 atcac 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 22510 - 22371
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgac 196  Q
    |||||||| ||||||  | || |||||||||| | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| ||||||    
T  22510 cagagctccagatatagccaaaacaagacagacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgac 22411  T
Q  197 tttaatattcttgtaaagtgagaacatcttaggatcacat 236  Q
    |||| ||||||||| ||| ||||  || ||||||||||||    
T  22410 tttattattcttgtcaagagagataattttaggatcacat 22371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 1884 - 1954
Alignment:
Q  6 aatattcataatttgctcttgaatcaaacagatgaaatgtagagaatttcgtaagctttccaacgagttaa 76  Q
    |||||||  ||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  1884 aatattccgaatttgctcttgagtcagacagatgaaatgtagagaattccataagctttccaacgagttaa 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 1964 - 2081
Alignment:
Q  120 acaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgactttaatattcttgtaaagtgag 218  Q
    ||||||||||||  | ||||||||||||||||| | |||||||| || || |||||| ||||||||||||| |||||| ||| |||||||||  || |||    
T  1964 acaagacagata--tcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattccacaatgacattattattcttgtcgagagag 2061  T
Q  219 aacatcttaggatcacatca 238  Q
    |  || ||||||||||||||    
T  2062 agaattttaggatcacatca 2081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 17768 - 17627
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgac 196  Q
    |||||||| ||||||  | || |||||||| | | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||| | | ||||    
T  17768 cagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgac 17669  T
Q  197 tttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||| ||||||||| ||| ||||  || ||||||||||||||    
T  17668 tttattattcttgtcaagagagagaattttaggatcacatca 17627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 27299 - 27158
Alignment:
Q  98 cagagctctagatatgacaaatacaagacagatacataatgacctacgaaaataacaatttgaaccaaatat-aatttgattcttttattccataatgac 196  Q
    |||||||| ||||||  | || |||||||| | | || ||||||||||||||||| | |||||||| || || |||||| ||||||||||| | | ||||    
T  27299 cagagctccagatatagccaaaacaagacatacatatcatgacctacgaaaataaaactttgaacccaaaattaatttggttcttttattcaacactgac 27200  T
Q  197 tttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    |||| ||||||||| ||| ||||  || ||||||||||||||    
T  27199 tttattattcttgtcaagagagagaattttaggatcacatca 27158  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 12037064 - 12037135
Alignment:
Q  169 taatttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatcaca 240  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||||    
T  12037064 taatttggttcttttattccacaatgactttattattcttgtcaagagagagaattttaggatcacatcaca 12037135  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 12037053 - 12036986
Alignment:
Q  171 atttgattcttttattccataatgactttaatattcttgtaaagtgagaacatcttaggatcacatca 238  Q
    ||||| ||||||||||||| |||||||||| ||||||||| ||| ||||  || ||||||||||||||    
T  12037053 atttggttcttttattccacaatgactttattattcttgttaagagagagaattttaggatcacatca 12036986  T

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