View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5674-Insertion-1 (Length: 211)

Name: NF5674-Insertion-1
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5674-Insertion-1
NF5674-Insertion-1
[»] chr4 (6 HSPs)
chr4 (97-147)||(19037738-19037788)
chr4 (97-151)||(5466080-5466134)
chr4 (113-151)||(19037951-19037989)
chr4 (109-143)||(46993308-46993342)
chr4 (100-148)||(8537804-8537852)
chr4 (111-151)||(17914979-17915019)
[»] chr3 (6 HSPs)
chr3 (97-151)||(8657415-8657469)
chr3 (97-151)||(46883643-46883697)
chr3 (97-151)||(8799547-8799601)
chr3 (109-151)||(43797380-43797422)
chr3 (109-151)||(8799345-8799387)
chr3 (111-148)||(33792730-33792767)
[»] chr6 (2 HSPs)
chr6 (106-151)||(22748613-22748658)
chr6 (99-149)||(24194971-24195021)
[»] chr5 (3 HSPs)
chr5 (109-151)||(31193993-31194035)
chr5 (109-151)||(31194196-31194238)
chr5 (110-151)||(17370096-17370137)
[»] chr1 (4 HSPs)
chr1 (109-151)||(34622556-34622598)
chr1 (97-151)||(34970216-34970270)
chr1 (110-150)||(34970014-34970054)
chr1 (114-150)||(49776852-49776888)
[»] chr2 (6 HSPs)
chr2 (110-151)||(22563441-22563482)
chr2 (109-151)||(4371482-4371524)
chr2 (109-151)||(17200106-17200148)
chr2 (109-151)||(17200309-17200351)
chr2 (109-151)||(20296647-20296689)
chr2 (109-151)||(22563238-22563280)
[»] chr8 (3 HSPs)
chr8 (97-149)||(22781285-22781337)
chr8 (105-151)||(43598069-43598115)
chr8 (110-151)||(6911260-6911301)
[»] chr7 (6 HSPs)
chr7 (104-151)||(48006355-48006402)
chr7 (109-151)||(35207206-35207248)
chr7 (110-151)||(35207406-35207447)
chr7 (109-149)||(19318452-19318492)
chr7 (109-149)||(25048257-25048297)
chr7 (109-149)||(39983870-39983910)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 19037738 - 19037788
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatg 147  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19037738 gagttcgggtatgctccatttactccatttaagatttggatgcaagacatg 19037788  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 5466134 - 5466080
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||| |||||||| ||||| | |||| ||| ||||||||||||    
T  5466134 gagttcgggtatgctctatttactctatttagggtttggatgtaagacatgtggc 5466080  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 19037989 - 19037951
Alignment:
Q  113 catttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  19037989 catttactccatttaggatttggatgcaagacatgtggc 19037951  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 46993342 - 46993308
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaaga 143  Q
    |||| ||||||||||||||||||||||||||||||    
T  46993342 gctcaatttactccatttaagatttgaatgcaaga 46993308  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 8537804 - 8537852
Alignment:
Q  100 ttcgggtatgctccatttactccatttaagatttgaatgcaagacatgt 148  Q
    ||||||||||||||||||| || |||||||  ||| |||||||||||||    
T  8537804 ttcgggtatgctccatttagtcaatttaaggattggatgcaagacatgt 8537852  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 17915019 - 17914979
Alignment:
Q  111 tccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  17915019 tccatttactccatttaaagtttggatgcaagacatgtggc 17914979  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 8657415 - 8657469
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  8657415 gagttcgggtatgctccatttactccatttagggtttgaatgcaagacatgtggc 8657469  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 46883697 - 46883643
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  46883697 gagttcgggtatgctccatttactccatttagggtttggatgcaagacatgtggc 46883643  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 8799601 - 8799547
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  8799601 gagttcgggtatgctccatttactccatttagggtttagatgcaagacatgtggc 8799547  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 43797380 - 43797422
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  43797380 gctccatttactccatttaaggtttggatgcaagacatgtggc 43797422  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 8799345 - 8799387
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  8799345 gctccatttactccatttagggtttggatgcaagacatgtggc 8799387  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 33792730 - 33792767
Alignment:
Q  111 tccatttactccatttaagatttgaatgcaagacatgt 148  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  33792730 tccatttagtccatttaagatttggatgcaagacatgt 33792767  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 22748613 - 22748658
Alignment:
Q  106 tatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  22748613 tatgctccatttactccatttaagatttggatgcaagacatgtggc 22748658  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 24194971 - 24195021
Alignment:
Q  99 gttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtg 149  Q
    |||||||||||||||||||| |||||||| | |||| ||||||||||||||    
T  24194971 gttcgggtatgctccatttagtccatttaggctttggatgcaagacatgtg 24195021  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 31193993 - 31194035
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  31193993 gctccatttactccatttaaggtttggatgcaagacatgtggc 31194035  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 31194238 - 31194196
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  31194238 gctccatttactccatttaaggtttggatgcaagacatgtggc 31194196  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 17370096 - 17370137
Alignment:
Q  110 ctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||| | |||| ||||||||||||||||    
T  17370096 ctccatttactccatttagggtttggatgcaagacatgtggc 17370137  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 34622598 - 34622556
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  34622598 gctccagttactccatttaaggtttgaatgcaagacatgtggc 34622556  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 34970270 - 34970216
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||| ||||||||||  ||||||| |||| ||| ||||||||||||    
T  34970270 gagttcgggtatgttccatttactttatttaaggtttggatgtaagacatgtggc 34970216  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 34970014 - 34970054
Alignment:
Q  110 ctccatttactccatttaagatttgaatgcaagacatgtgg 150  Q
    |||||||||||| ||||| |||||| |||||||||||||||    
T  34970014 ctccatttactcaatttaggatttggatgcaagacatgtgg 34970054  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 49776852 - 49776888
Alignment:
Q  114 atttactccatttaagatttgaatgcaagacatgtgg 150  Q
    |||||||||||||| |||||| |||||||||||||||    
T  49776852 atttactccatttaggatttggatgcaagacatgtgg 49776888  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 22563482 - 22563441
Alignment:
Q  110 ctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  22563482 ctccatttactccatttaggatttggatgcaagacatgtggc 22563441  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 4371482 - 4371524
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  4371482 gctccatttactccatttagggtttggatgcaagacatgtggc 4371524  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 17200106 - 17200148
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||    
T  17200106 gctccatttactccatttaggatttggatgtaagacatgtggc 17200148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 17200351 - 17200309
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||    
T  17200351 gctccatttactccatttaaggtttggatgtaagacatgtggc 17200309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 20296689 - 20296647
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||    
T  20296689 gctccatttactccatttaagaattggatgtaagacatgtggc 20296647  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 22563238 - 22563280
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  22563238 gctccatttactccatttagggtttggatgcaagacatgtggc 22563280  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 22781337 - 22781285
Alignment:
Q  97 gagttcgggtatgctccatttactccatttaagatttgaatgcaagacatgtg 149  Q
    ||||||||||||||||||||||||| ||||| | |||| |||||||| |||||    
T  22781337 gagttcgggtatgctccatttactcaatttagggtttggatgcaagatatgtg 22781285  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 43598069 - 43598115
Alignment:
Q  105 gtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  43598069 gtatgctcaatttagtccatttaagatttagatgcaagacatgtggc 43598115  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 6911301 - 6911260
Alignment:
Q  110 ctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||| | |||| ||||||||||||||||    
T  6911301 ctccatttactccatttagggtttggatgcaagacatgtggc 6911260  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 48006402 - 48006355
Alignment:
Q  104 ggtatgctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||| ||||| |||||| |||||| |||||||||    
T  48006402 ggtatgctccatttactctatttaggatttggatgcaaaacatgtggc 48006355  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 35207206 - 35207248
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  35207206 gctccatttactccatttagggtttggatgcaagacatgtggc 35207248  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 35207447 - 35207406
Alignment:
Q  110 ctccatttactccatttaagatttgaatgcaagacatgtggc 151  Q
    |||||||||||||||||| | |||| ||||||||||||||||    
T  35207447 ctccatttactccatttagggtttggatgcaagacatgtggc 35207406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 19318492 - 19318452
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtg 149  Q
    ||||||||||||||||||||| |||  ||||||||||||||    
T  19318492 gctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 25048297 - 25048257
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtg 149  Q
    |||||||||||| |||||| |||||| ||||||||||||||    
T  25048297 gctccatttacttcatttaggatttggatgcaagacatgtg 25048257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 39983910 - 39983870
Alignment:
Q  109 gctccatttactccatttaagatttgaatgcaagacatgtg 149  Q
    ||||||||||||||||||| | |||| ||||||||||||||    
T  39983910 gctccatttactccatttagggtttggatgcaagacatgtg 39983870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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