View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5674-Insertion-2 (Length: 1092)
Name: NF5674-Insertion-2
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 852; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 44 - 1053
Target Start/End: Original strand, 3451884 - 3452902
Alignment:
| Q |
44 |
aatgccttgaattctgtatttgaacatttcatcaatttgaatgcccgatctccagagttcatttctttgtttgtggatgacaaacttcgcagagggttaa |
143 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||| |
|
|
| T |
3451884 |
aatgccttgaattctgcatttgaatatttcatcaatttgagtgcccgatctccagaattcatttctttgtttgtggatgataaacttcgtagagggataa |
3451983 |
T |
|
| Q |
144 |
aaggggctggtgaggaggatttggagattgtacttaacaaagtcatgatgcttttgaggtacctgcaagagaaggatgtgtttgagaagtattgcaagca |
243 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3451984 |
aaggggttggtgaggaggatgtagagattgtactagacaaagtcatgatgcttttccggtacctgcaagagaaggatgtgtttgagaagtattataagca |
3452083 |
T |
|
| Q |
244 |
acacctagcaaaaaggcttctttcggggaagactgtatcagatgaggcagaaagaagtttaattcttaagctcaaaacagaatgtggatatcaattcact |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452084 |
acacctagcaaaaaggcttctttcggggaagactgtatccgatgaggcagaaagaagtttgattcttaagctcaaaacagaatgtggatatcaattcact |
3452183 |
T |
|
| Q |
344 |
tctaagttagagggtatgtttacagacatgaagacttcttatgatacgatgcaaggtttcttagctgatcatggtgctgagttgggagatagccctacac |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3452184 |
tctaagttagagggtatgtttacagacatgaagacttcttatgatacgatgcaaggtttcttagctgatcatggtgcttagttgggagatagccctacac |
3452283 |
T |
|
| Q |
444 |
tatctgtccaggtgcttacaacaggttcatggctaactcaacctagtccgcaatgtaatcttccatctgaaatccggggtctatgtgagaagtttcgtaa |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452284 |
tatctgtccaggtgcttacaacaggttcatggcctactcaacctagtccgcaatgtaatcttccatctgaaatccggggtctatgtgagaagtttcgtaa |
3452383 |
T |
|
| Q |
544 |
ttattatctcggcgctcacagtggtaggaggttgacgtggcaagctaatatggggaatgctgatttgaaagctacatttggtaagggccagaagcatgag |
643 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452384 |
ttattatctcggctctcacagtggtaggaggttgacgtggcaagctaatatggggaatgctgatttgaaagctacatttggtaagggccagaagcatgag |
3452483 |
T |
|
| Q |
644 |
ctgaatgtttctacataccagatgtgtgtactaatgcttttcaacaatgctgatcggatgacttgtaaggagatagagcaggctacagcaatacccatgt |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452484 |
ctgaatgtttctacataccagatgtgtgtactaatgcttttcaacaatgctgatcggatgacttgtaaggagatagagcaggctacagcaatacccatgt |
3452583 |
T |
|
| Q |
744 |
cagactcgaagaggtgccttcagtcgttggccttggtcaaagggaaaaatgttcttcggaaagagccactgagcaaggacatatctgaagatgatgtgtt |
843 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3452584 |
cagacttgaagaggtgccttcagtcgttggccttggtcaaagggaaaaatgttcttcggaaagagccaatgagcaaggacatatctgaagatgatgtgtt |
3452683 |
T |
|
| Q |
844 |
ctttttcaatgaaaaattcactagcaagctcttcaaggtaaaaatagggactgttgttgcacaaagggagaccgaaccagaaaatatagaaactcggcaa |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452684 |
ctttttcaatgaaaaattcactagcaagctcttcaaggtaaaaatagggactgttgttgcacaaagggagaccgaaccagaaaatatagaaactcggcaa |
3452783 |
T |
|
| Q |
944 |
agagt-gaggaagacagaaagccgcagattgag-cagcaattgtga-ggtaatg-aatctaggcgg--tttagagcataataatgtcatcg-cga-gtca |
1035 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
3452784 |
agagtggaggaagatagaaagccgcagattgagtcagcaattgtgagggtaatgaaatctaggcgggttttagagcataataatgtcatcgccgaggtca |
3452883 |
T |
|
| Q |
1036 |
cg-agcagctgcaggcgcg |
1053 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
3452884 |
cgaagcagctgcaggcgcg |
3452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 44 - 1053
Target Start/End: Original strand, 3504737 - 3505755
Alignment:
| Q |
44 |
aatgccttgaattctgtatttgaacatttcatcaatttgaatgcccgatctccagagttcatttctttgtttgtggatgacaaacttcgcagagggttaa |
143 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |||| | ||| |
|
|
| T |
3504737 |
aatgccttgaattctgcatttgaatatttcatcaatttgagtgcccgatctccagaattcatttctttgtttgtggatgataaacttcgtagagagataa |
3504836 |
T |
|
| Q |
144 |
aaggggctggtgaggaggatttggagattgtacttaacaaagtcatgatgcttttgaggtacctgcaagagaaggatgtgtttgagaagtattgcaagca |
243 |
Q |
| |
|
|||||| ||||||||||||| | |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3504837 |
aaggggttggtgaggaggatgtagagactgtactagacaaagtcatgatgcttttccggtacctgcaagagaaggatgtgtttgagaagtattataagca |
3504936 |
T |
|
| Q |
244 |
acacctagcaaaaaggcttctttcggggaagactgtatcagatgaggcagaaagaagtttaattcttaagctcaaaacagaatgtggatatcaattcact |
343 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3504937 |
acacctagcaaaaaggcttctttcgtggaagactgtatctgatgaggcagaaagaagtttgatttttaagctcaaaacagaatgtggatatcaattcact |
3505036 |
T |
|
| Q |
344 |
tctaagttagagggtatgtttacagacatgaagacttcttatgatacgatgcaaggtttcttagctgatcatggtgctgagttgggagatagccctacac |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3505037 |
tctaagttagagggtatgtttacagacatgaagacttcttatgatacgatgcaaggtttcttagctgatcatggtgcttagttgggagatagccctacac |
3505136 |
T |
|
| Q |
444 |
tatctgtccaggtgcttacaacaggttcatggctaactcaacctagtccgcaatgtaatcttccatctgaaatccggggtctatgtgagaagtttcgtaa |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3505137 |
tatctgtccaggtgcttacaacaggttcatggcctactcaacctagtccgcaatgtaatcttccatctgaaatccggggtctatgtgagaagtttcgtaa |
3505236 |
T |
|
| Q |
544 |
ttattatctcggcgctcacagtggtaggaggttgacgtggcaagctaatatggggaatgctgatttgaaagctacatttggtaagggccagaagcatgag |
643 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3505237 |
ttattatctcggctctcacagtggtaggaggttgacgtggcaagctaatatggggaatgctgatttgaaagctacatttggtaagggccagaagcatgag |
3505336 |
T |
|
| Q |
644 |
ctgaatgtttctacataccagatgtgtgtactaatgcttttcaacaatgctgatcggatgacttgtaaggagatagagcaggctacagcaatacccatgt |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3505337 |
ctgaatgtttctacataccagatgtgtgtactaatgcttttcaacaatgctgatcggatgacttgtaaggagatagagcaggctacagcaatacccatgt |
3505436 |
T |
|
| Q |
744 |
cagactcgaagaggtgccttcagtcgttggccttggtcaaagggaaaaatgttcttcggaaagagccactgagcaaggacatatctgaagatgatgtgtt |
843 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
3505437 |
cagacttgaagaggtgccttcagtcgttggccttggtcaaagggaaaaatgttcttcggaaagagctaatgagcaaggacatatctgaagatgatgtgtt |
3505536 |
T |
|
| Q |
844 |
ctttttcaatgaaaaattcactagcaagctcttcaaggtaaaaatagggactgttgttgcacaaagggagaccgaaccagaaaatatagaaactcggcaa |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3505537 |
ctttttcaatgaaaaattcactagcaagctcttcaaggtaaaaatagggactgttgttgcacaaagggagaccgaaccagaaaatatagaaactcggcaa |
3505636 |
T |
|
| Q |
944 |
agagt-gaggaagacagaaagccgcagattgag-cagcaattgtga-ggtaatg-aatctaggcgg--tttagagcataataatgtcatcg-cga-gtca |
1035 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
3505637 |
agagtggaggaagaaagaaagccgcagattgagacagcaattgtgagggtaatgaaatctaggcgggttttagagcataataatgtcatcgccgaggtca |
3505736 |
T |
|
| Q |
1036 |
cg-agcagctgcaggcgcg |
1053 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
3505737 |
cgaagcagctgcaggcgcg |
3505755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 207 - 375
Target Start/End: Complemental strand, 24395026 - 24394858
Alignment:
| Q |
207 |
tgcaagagaaggatgtgtttgagaagtattgcaagcaacacctagcaaaaaggcttctttcggggaagactgtatcagatgaggcagaaagaagtttaat |
306 |
Q |
| |
|
||||||| || ||||| ||||||||||||| || || || || ||||| |||||| | || || || || || || ||||| || ||||||||| | || |
|
|
| T |
24395026 |
tgcaagaaaaagatgtttttgagaagtattataaacagcatctggcaaagaggcttttgtctggaaaaacggtttctgatgatgctgaaagaagtctcat |
24394927 |
T |
|
| Q |
307 |
tcttaagctcaaaacagaatgtggatatcaattcacttctaagttagagggtatgtttacagacatgaa |
375 |
Q |
| |
|
| |||||||||| || |||||||| |||||||| || || || |||||||| ||||||||||||||||| |
|
|
| T |
24394926 |
tgttaagctcaagactgaatgtggctatcaatttacatcaaaattagagggaatgtttacagacatgaa |
24394858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 611 - 697
Target Start/End: Complemental strand, 24394625 - 24394539
Alignment:
| Q |
611 |
aaagctacatttggtaagggccagaagcatgagctgaatgtttctacataccagatgtgtgtactaatgcttttcaacaatgctgat |
697 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||| | ||||| ||||| ||||| |||||||| || ||||||||||| ||||||||| |
|
|
| T |
24394625 |
aaagcaacctttgggaagggtcagaagcatgagttaaatgtctctacctaccaaatgtgtgtccttatgcttttcaataatgctgat |
24394539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 24395171 - 24395101
Alignment:
| Q |
62 |
tttgaacatttcatcaatttgaatgcccgatctccagagttcatttctttgtttgtggatgacaaacttcg |
132 |
Q |
| |
|
|||||| ||||||| || |||||| |||| ||||||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
24395171 |
tttgaatatttcattaacttgaatccccgttctccagagttcatttcactatttgtagatgataaacttcg |
24395101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 17621517 - 17621444
Alignment:
| Q |
309 |
ttaagctcaaaacagaatgtggatatcaattcacttctaagttagagggtatgtttacagacatgaagacttct |
382 |
Q |
| |
|
|||||||||| |||||||||||||| || || || || || |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
17621517 |
ttaagctcaagacagaatgtggataccattttacctcaaaattagagggcatgtttacagatatgaaaacttct |
17621444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 14749455 - 14749389
Alignment:
| Q |
309 |
ttaagctcaaaacagaatgtggatatcaattcacttctaagttagagggtatgtttacagacatgaa |
375 |
Q |
| |
|
|||||||||| | |||||||||||| ||||| ||||| || |||||||| ||| ||| ||||||||| |
|
|
| T |
14749455 |
ttaagctcaagaaagaatgtggataccaatttacttcaaaattagagggaatgcttaaagacatgaa |
14749389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 15194949 - 15194884
Alignment:
| Q |
310 |
taagctcaaaacagaatgtggatatcaattcacttctaagttagagggtatgtttacagacatgaa |
375 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| | || |||||||| ||||| ||||||||||| |
|
|
| T |
15194949 |
taagctcaagacagaatgtggatacgaatttactgcaaaattagagggcatgttaacagacatgaa |
15194884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 15215367 - 15215302
Alignment:
| Q |
310 |
taagctcaaaacagaatgtggatatcaattcacttctaagttagagggtatgtttacagacatgaa |
375 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| | || |||||||| ||||| ||||||||||| |
|
|
| T |
15215367 |
taagctcaagacagaatgtggatacgaatttactgcaaaattagagggcatgttaacagacatgaa |
15215302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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