View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5674-Insertion-3 (Length: 1062)

Name: NF5674-Insertion-3
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5674-Insertion-3
NF5674-Insertion-3
[»] chr3 (1 HSPs)
chr3 (19-1035)||(48579336-48580337)
[»] chr1 (1 HSPs)
chr1 (247-285)||(47030104-47030142)


Alignment Details
Target: chr3 (Bit Score: 814; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 19 - 1035
Target Start/End: Complemental strand, 48580337 - 48579336
Alignment:
Q  19 tgtgttatgactactttgacgaattgattcagccttcagaattaattatacttgaagttattatgtatttttcgggaaattccacgagggtgtgtattta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||    
T  48580337 tgtgttatgactactttgacgaattgattcagccttcagaattaattatacttgaagttat---gtattttttgggaaattccacgagggtgtgtattta 48580241  T
Q  119 tgagttacaaggcaaactgcatacaacatatacatgctaattttttctaattcnnnnnnncaaataaagtaaacagnnnnnnnnnnnnnnnngccatgac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||                ||||||||    
T  48580240 tgagttacaaggcaaactgcatacaacatatacatgctaattttttctaattctttttttcaaataaagtaaacagaaagaaaaaagaaaaagccatgac 48580141  T
Q  219 tgtaatactacccaatctagacaacccatattcactacacacccaaagacatcaccatcaccatcaccatctctcacaaacccaacaactctgtttagtc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48580140 tgtaatactacccaatctagacaacccatattcactacacacccaaagacatcaccatcaccatcaccatctctcacaaacccaacagctctgtttagtc 48580041  T
Q  319 atattccatggcggtggattattcgaatatgaatctactttttcaaaactctaccagcacacttcaacacctttgttccacgcaaaaatagcatgtgttt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48580040 atattccatggcggtggattattcgaatatgaatctactttttcaaaactctaccagcacacttcaacacctttgttccacgcaaaaatagcatgtattt 48579941  T
Q  419 attgttgttgaatacaaacttggtctagaacacccccttcctgcatgttaccatgattacgtaaactttaaatcttggaatccactactttcggcagctt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48579940 attgttgttgaatacaaacttggtctagaacacccccttcctgcatgttaccatgattacataaactttaaatcttggaatccactactttcggcagctt 48579841  T
Q  519 ctaattcttcttccaaaaaccccatcttcccaaaactgatcaatcgtgggtacaaacaggaaatctcaaacatcaattgaaggaatgggcaatttacata 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48579840 ctaattcttcttccaaaaaccccatcttcccaaaactgatcaatcgtgggtacaaacaggaaatctcaaacatcaattgaaggaatgggcaatttacaaa 48579741  T
Q  619 ggatgtgaaatagtagagtgatatgaagagtgtgaaactttgaaggaaaagaaagggaagactgacttgagagagaagctgtaaaacgcaaatgaccgtt 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48579740 ggatgtgaaatagtagagtgatatgaagagtgtgaaactttgaaggaaaagaaagggaagactgacttgagagagaagctgtaaaacgcaaatgaccgtt 48579641  T
Q  719 ccacgtcattcgctaggctctcgtgaaacagattttgaagagatctagcattttcctaaatttattactaaaatttagtaagaattatttttatccaaaa 818  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48579640 ccacgtcattcgctaggctctcgtgaaacagattttggagagatctagcattttcctaaatttataactaaaatttagtaagaattatttttatccaaaa 48579541  T
Q  819 tcaattctccatatcttaaaaattatgtgtgcccaaagtcattcagtcaagatagtcccgtgatcttactatgcaatcttaattggaacagcttcaattt 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||      
T  48579540 tcaattctccatatcttaaaaattatgtgtgcccaaagtcattcagtcaagatagtcacgtgatcttactatgcaatcttaattgg-acagcttcaat-- 48579444  T
Q  919 caactttgcgaaatttgtgccaagtttacaggtacaccgctg-aaaaaggctgca-ctcaaatcacaccatcctatctcgattt-atggtcaccacgccg 1015  Q
                |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||||||  ||    
T  48579443 ------------atttgtgccaagtttacaggtacaccgctgaaaaaaggctgcacctcaaatcacactatcctatctcgatttaatggtcaccactgcg 48579356  T
Q  1016 atgatggcatggatttgtga 1035  Q
    ||||||||||||||||||||    
T  48579355 atgatggcatggatttgtga 48579336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 47030142 - 47030104
Alignment:
Q  247 tattcactacacacccaaagacatcaccatcaccatcac 285  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47030142 tattcactacacacccaaagacatcaccatcaccatcac 47030104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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