View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674-Insertion-5 (Length: 525)
Name: NF5674-Insertion-5
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 241 - 494
Target Start/End: Complemental strand, 3506225 - 3505971
Alignment:
| Q |
241 |
tttccaagcatttaatttcatagactagttccttagcctctag-aactttgtaggacttgaaaatcattgtaaaaatcatatgataaaactacataaatt |
339 |
Q |
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| T |
3506225 |
tttccaagcatttaatttaatagactagttccttagcctctaggaactttctagcatttaaaaatcgttgtaaaaatcatatgataaaactgcataaatt |
3506126 |
T |
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| Q |
340 |
gataatactcctttaaagttggagaaaactccatggagaaaataaattaacaaacatcagataccttagctcagatcagaatgtatatgacagacaatca |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
3506125 |
gataatactcctttaaagttggagaaaactccatggagaaaataaattaacaaacatcagatacattaactcagatcagaatgtatatgacagacaatca |
3506026 |
T |
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| Q |
440 |
aagtatataacagacaaaataacaactcgtgcaaaatacacatactgtttcaagc |
494 |
Q |
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| T |
3506025 |
aagtatataacagacaaaataacaactcgcgcaaaatacacatactgtttcaagc |
3505971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 3499602 - 3499456
Alignment:
| Q |
96 |
ttgaaactatcccaaacagaatgatttcccatttcaaggaacaagttgttagcaacatcatctgtccttattttctcatgtgatattagcactagcttat |
195 |
Q |
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| T |
3499602 |
ttgaagctatcccaaacagagtgatttcccatttcaaggagcaggttgctagcaacatcatctgtcattactttctcgtgtgactttaggactagcttat |
3499503 |
T |
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| Q |
196 |
atagattggaaaccaaagggtttctaagaaatggattaatagctctt |
242 |
Q |
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| T |
3499502 |
atagattagaaaccaaagggtttctaagaaatggattaatagctctt |
3499456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 3453020 - 3452975
Alignment:
| Q |
480 |
catactgtttcaagcaagatagcggtacaattttctgtccacttta |
525 |
Q |
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| T |
3453020 |
catactgtttcaagcaagatagcggtacaattttctgtccacttta |
3452975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 525
Target Start/End: Complemental strand, 3505873 - 3505828
Alignment:
| Q |
480 |
catactgtttcaagcaagatagcggtacaattttctgtccacttta |
525 |
Q |
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| T |
3505873 |
catactgtttcaagcaagatagcggtacaattctctgtccacttta |
3505828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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