View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674-Insertion-6 (Length: 453)
Name: NF5674-Insertion-6
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Original strand, 32679204 - 32679581
Alignment:
| Q |
8 |
atttgtgcttggaagaagatatcaaatagtaatacctcatgtctttctttcatagaaaatggaacagatggtaaaatatcttttgaaccctctggcaaaa |
107 |
Q |
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| T |
32679204 |
atttgtgcttggaagaagatatcaaatagtaatacctcatgtctttctttcataggaaatggaacagatggtaaaatatcttttgaaccctctggcaaaa |
32679303 |
T |
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| Q |
108 |
caacctgaaagttgaaagcaccggcggatgtattagtaagtcatacctacacaataatactacaatgacaacaaccaaagacggagcaggaaaaactgca |
207 |
Q |
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| T |
32679304 |
caacctgaaagttgcaagcaccggcggatgtattagtaagtcatacctacacaataatactacaatgacaacaaccaaagacagagcaggaaaaactgca |
32679403 |
T |
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| Q |
208 |
aaaattgaatccttggtaaaaatatttcagatttaggaatgattaactgcgtcaacaagtggtttactagttaagcacgtgcaaaataattagagttcac |
307 |
Q |
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| T |
32679404 |
aaaattgaatccttggtaaaaatatttcagatttaggaatgattaactgcgtcaacaagtggtttaccagttaagcacgtgcaaaataattagagttcac |
32679503 |
T |
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| Q |
308 |
acttatattctcaaaaatttaatcattgacaactgaaaatagataaattctccaaacactgcattccaagtttgcaac |
385 |
Q |
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| T |
32679504 |
acttatattctcaaaaatttaatcattgacaactgaaaatagataaattctccaaagactgcattccaagtttgcaac |
32679581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 54225408 - 54225211
Alignment:
| Q |
16 |
ttggaagaagatatcaaa-tagtaatacctcatgtctttctttcatagaaaatggaacagatggtaaaatatcttttgaaccctctggcaaaacaacctg |
114 |
Q |
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| T |
54225408 |
ttggaagaagatatcaaaatagcaatacctcatgtctttctttcacaggaaatggaacagatggtgaaatatcttttgaaccctctggcaagacaacctg |
54225309 |
T |
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| Q |
115 |
aaagttgaaagcaccggcggatgtattagtaagtcatacctacacaataatactacaatgacaacaaccaaagac--ggagcaggaaaaactgcaaaaa |
211 |
Q |
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| T |
54225308 |
aaagttgcaagcactggcagatgtattagtaagtcatacctacacaat-atactacaatgacaacaaccaaagacaaagagtaggaaaaactgcaaaaa |
54225211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 54225093 - 54225056
Alignment:
| Q |
348 |
agataaattctccaaacactgcattccaagtttgcaac |
385 |
Q |
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| T |
54225093 |
agataaattctccaaagattgcattccaagtttgcaac |
54225056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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