View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674-Insertion-8 (Length: 236)
Name: NF5674-Insertion-8
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 27985468 - 27985261
Alignment:
| Q |
8 |
gtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaa |
107 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27985468 |
gtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaatcttaa |
27985371 |
T |
|
| Q |
108 |
ctaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgcca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985370 |
ctaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgcca |
27985271 |
T |
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| Q |
208 |
gttctttcat |
217 |
Q |
| |
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|||||||||| |
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| T |
27985270 |
gttctttcat |
27985261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 28071998 - 28071791
Alignment:
| Q |
8 |
gtgagttgaactcaaatctgttaagtagcaacgtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaa |
107 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28071998 |
gtgagttgaactcaaatctgtta--tagcaacgtaaaaatatattctattgataggttcctaacagaacctaacccagctaaattcatttctaatcttaa |
28071901 |
T |
|
| Q |
108 |
ctaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgcca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071900 |
ctaaaaagtaactcaaatttagaaaaactgccacttgtttatatactgaagccaacattctgaaactttacttttctaccaaaccttcttccagccgcca |
28071801 |
T |
|
| Q |
208 |
gttctttcat |
217 |
Q |
| |
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|||||||||| |
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| T |
28071800 |
gttctttcat |
28071791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 26415454 - 26415569
Alignment:
| Q |
40 |
gtaaacatatattctattgataggttctgttaggaacctaacccagctaaattcatttctaatcttaactaaaaagtaactcaaatttagaaaaactgcc |
139 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| | |||||| |
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| T |
26415454 |
gtaaacatatattccattgataggttcctaacagaacctaacccagctaaattcatttctaat---------aaagtaactgaaattt---ataactgct |
26415541 |
T |
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| Q |
140 |
acttgtttatatactgaagccaacattc |
167 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
26415542 |
acttgtttatatactgaagccagcattc |
26415569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 26415620 - 26415671
Alignment:
| Q |
162 |
acattctgaaactttacttttctaccaaaccttcttccagccgccagttctt |
213 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
26415620 |
acattctgaaaatatacttttctaccaaaccttcttcaggccgccagttctt |
26415671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 26415296 - 26415333
Alignment:
| Q |
7 |
agtgagttgaactcaaatctgttaagtagcaacgtaaa |
44 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
26415296 |
agtgagttgaactcaaatctgttaagtagcaaggtaaa |
26415333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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