View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674-Insertion-9 (Length: 167)
Name: NF5674-Insertion-9
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 36628093 - 36627978
Alignment:
| Q |
34 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
133 |
Q |
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| T |
36628093 |
aatattaaagtatttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaacttt |
36627994 |
T |
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| Q |
134 |
acccactttcattcat |
149 |
Q |
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|||||||||||||||| |
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| T |
36627993 |
acccactttcattcat |
36627978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 36622871 - 36622741
Alignment:
| Q |
20 |
caatacattcaatcaatattaaagt-atttcatgaattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccat |
118 |
Q |
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||||||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36622871 |
caatacattcaatcaatatacaagtcatagcatagattgattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactcctt |
36622772 |
T |
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| Q |
119 |
ctcacctcaaactttacccactttcattcat |
149 |
Q |
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| T |
36622771 |
ctcaccttaaactttatccactttctttcat |
36622741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 36634207 - 36634120
Alignment:
| Q |
53 |
aattaattaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttc |
143 |
Q |
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|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
36634207 |
aattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttccactttc |
36634120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 34328889 - 34328980
Alignment:
| Q |
58 |
attaccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcat |
149 |
Q |
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|||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||| |
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| T |
34328889 |
attaccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttctttcat |
34328980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 34319987 - 34320072
Alignment:
| Q |
64 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctcaaactttacccactttcattcat |
149 |
Q |
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|||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||| ||||| |
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| T |
34319987 |
atggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttatccactttctttcat |
34320072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 45307192 - 45307140
Alignment:
| Q |
64 |
atggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactcc |
116 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||| |||||||| |
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|
| T |
45307192 |
atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcc |
45307140 |
T |
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