View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5674_high_15 (Length: 224)

Name: NF5674_high_15
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5674_high_15
NF5674_high_15
[»] chr6 (7 HSPs)
chr6 (1-224)||(31597564-31597787)
chr6 (158-224)||(2801278-2801344)
chr6 (145-221)||(2817227-2817303)
chr6 (140-224)||(342933-343017)
chr6 (138-224)||(9049970-9050056)
chr6 (147-213)||(30326666-30326732)
chr6 (158-220)||(29301761-29301823)
[»] chr1 (16 HSPs)
chr1 (145-224)||(49806010-49806089)
chr1 (139-224)||(27262785-27262870)
chr1 (137-224)||(26761209-26761297)
chr1 (145-218)||(31963039-31963112)
chr1 (145-216)||(47019017-47019088)
chr1 (138-224)||(7444898-7444984)
chr1 (158-224)||(23527247-23527313)
chr1 (167-220)||(9682249-9682302)
chr1 (147-224)||(44529249-44529326)
chr1 (172-224)||(50015598-50015650)
chr1 (165-216)||(42724384-42724435)
chr1 (174-224)||(26478054-26478104)
chr1 (138-224)||(44698014-44698100)
chr1 (191-224)||(18436842-18436875)
chr1 (191-224)||(18447700-18447733)
chr1 (191-224)||(18452793-18452826)
[»] chr3 (3 HSPs)
chr3 (138-224)||(43767273-43767359)
chr3 (145-224)||(24487725-24487804)
chr3 (162-224)||(53248614-53248676)
[»] chr7 (3 HSPs)
chr7 (153-224)||(47188417-47188488)
chr7 (176-220)||(30833450-30833494)
chr7 (158-224)||(39258866-39258931)
[»] chr5 (4 HSPs)
chr5 (145-217)||(9784435-9784507)
chr5 (145-224)||(40323848-40323927)
chr5 (145-223)||(41174346-41174424)
chr5 (159-224)||(42644209-42644274)
[»] chr8 (11 HSPs)
chr8 (145-224)||(10409681-10409760)
chr8 (147-224)||(39900304-39900381)
chr8 (158-216)||(24585829-24585887)
chr8 (145-223)||(29912129-29912207)
chr8 (139-224)||(42964770-42964854)
chr8 (145-217)||(41570032-41570104)
chr8 (158-224)||(7859162-7859228)
chr8 (158-224)||(11766527-11766593)
chr8 (158-224)||(43291872-43291938)
chr8 (195-224)||(29107275-29107304)
chr8 (138-215)||(32615819-32615896)
[»] chr4 (11 HSPs)
chr4 (147-224)||(44131032-44131109)
chr4 (145-220)||(23568038-23568113)
chr4 (145-224)||(27915209-27915288)
chr4 (145-224)||(37626931-37627010)
chr4 (167-222)||(33881906-33881961)
chr4 (158-224)||(5497749-5497815)
chr4 (167-224)||(8753051-8753109)
chr4 (133-215)||(11123441-11123523)
chr4 (158-224)||(43921134-43921200)
chr4 (183-224)||(6334417-6334458)
chr4 (179-224)||(56128630-56128675)
[»] chr2 (3 HSPs)
chr2 (158-224)||(17897850-17897916)
chr2 (145-224)||(11074544-11074623)
chr2 (147-216)||(37426571-37426640)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31597787 - 31597564
Alignment:
Q  1 ctaagttagttccacaaaaggaagaagtgaaagagaatatatatagagatgcaagaaagagagaacttgtgagtgttagttgattctagtaaagatatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31597787 ctaagttagttccacaaaaggaagaagtgaaagagaatatatatagagatgcaagaaagagagaacttgtgagtgttagttgattctagtaaagatatga 31597688  T
Q  101 gtttaattagtatactttgttcagtttgtaattatttttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31597687 gtttaattagtatactttgttcagtttgtaattatttttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacaca 31597588  T
Q  201 ttaaaatatcaaaaagtaactttt 224  Q
    |||||| || ||||||||||||||    
T  31597587 ttaaaacattaaaaagtaactttt 31597564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 2801278 - 2801344
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| ||| ||||||||||||||| || |||||||||||||||| || ||||||||||||||    
T  2801278 tttaaaatgaaaactttgtcttgaaatttatgtattcaacacattaaaacattaaaaagtaactttt 2801344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 2817227 - 2817303
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaact 221  Q
    |||||||||||| |||||||| |||||||| || || |||||||  ||||||||| |||||| ||||||||||||||    
T  2817227 acttgataagaggtttaaaatagaaattttttcctggaatttgtttattcaacacgttaaaacatcaaaaagtaact 2817303  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 342933 - 343017
Alignment:
Q  140 agggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||||| |  ||||||||| ||||||||| ||| ||||| || |||||||||||| ||| || ||||| ||||||||    
T  342933 agggtacttgataaaaagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaataactttt 343017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 9049970 - 9050056
Alignment:
Q  138 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| ||||||||| |  |||||||| |||| ||| | |||||| ||||| |||||||||||| |||||| ||||||||| ||||    
T  9049970 ttagggcacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtattcaacacattgaaatattaaaaagtaattttt 9050056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 30326666 - 30326732
Alignment:
Q  147 ttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaa 213  Q
    |||||||||  ||||||||||||||||| |||||  ||||||| |||||||||||| ||| ||||||    
T  30326666 ttgataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaa 30326732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 29301823 - 29301761
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaac 220  Q
    ||||||||||| | ||||||||| || |||||||||||||| ||| ||| | |||||||||||    
T  29301823 tttaaaatggagactttgtcttggaaattgtgcattcaacatattgaaacaacaaaaagtaac 29301761  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 49806089 - 49806010
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49806089 acttgataagaggtttaaaataaaaattttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaactttt 49806010  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 27262870 - 27262785
Alignment:
Q  139 tagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| |||||||  ||||||||||||||||||||||  |||||||| |||||||||||||||| || ||||||||| ||||    
T  27262870 tagggtactcgataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttt 27262785  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 26761297 - 26761209
Alignment:
Q  137 tttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatc-aaaaagtaactttt 224  Q
    ||||||| | |||||||||| ||||||||| ||||||| |||| ||||||||| |||||||||||||||| ||| ||||||||| ||||    
T  26761297 tttagggcatttgataagaggtttaaaatgaaaattttatcttaaaatttgtgtattcaacacattaaaacatcgaaaaagtaaatttt 26761209  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 31963112 - 31963039
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagta 218  Q
    |||||||||||  ||||||||||||||||||| ||| |||||||| |||||||||||| ||| || ||||||||    
T  31963112 acttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 47019088 - 47019017
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaag 216  Q
    |||||||||||  |||||| ||||| |||| ||||| ||||| ||||||||| ||||| |||||||||||||    
T  47019088 acttgataagaagtttaaagtggaagttttttcttggaatttttgcattcaatacattgaaatatcaaaaag 47019017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 7444898 - 7444984
Alignment:
Q  138 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| |||||||||||  || |||   |||| ||| |||||| ||||||| |||||||||||| ||||||||||||| |||||||    
T  7444898 ttagggcacttgataagaaattcaaagaagaaactttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttt 7444984  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 23527247 - 23527313
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||| |||||||| |||| ||||||| | ||| ||||| |||||||||| ||||    
T  23527247 tttaaaatggaaattttatcttgaaaattgtacattcaatatattgaaataacaaaaagtaattttt 23527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 9682249 - 9682302
Alignment:
Q  167 gaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaac 220  Q
    |||||||| |||||||| |||||||||||||||||||||| | |||||| ||||    
T  9682249 gaaattttatcttgaaaattgtgcattcaacacattaaaacaacaaaaaataac 9682302  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 44529249 - 44529326
Alignment:
Q  147 ttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||  |||||| ||||| |||| |||| ||| ||||| |||||||| ||||||| || ||||||||||||||    
T  44529249 ttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagtaactttt 44529326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 50015650 - 50015598
Alignment:
Q  172 tttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| |||||||  |||||||||||| ||| |||||||||||||||||    
T  50015650 tttgtcttggaatttgtatattcaacacattcaaaaatcaaaaagtaactttt 50015598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 42724384 - 42724435
Alignment:
Q  165 tggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaag 216  Q
    |||||||||| |||| ||| ||||| |||||||||||||||||| |||||||    
T  42724384 tggaaattttatcttaaaaattgtgtattcaacacattaaaataacaaaaag 42724435  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 26478054 - 26478104
Alignment:
Q  174 tgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||| ||||||| | |||||||||||||| |||||||| ||||||||    
T  26478054 tgtcttgagatttgtgtactcaacacattaaaacatcaaaaaataactttt 26478104  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 44698014 - 44698100
Alignment:
Q  138 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| ||||||||| |  |||||| ||||| |||| ||||| || ||||| |||||||| ||| ||| || ||||||||||||||    
T  44698014 ttagggcacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaaagtaactttt 44698100  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 18436875 - 18436842
Alignment:
Q  191 attcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||||||||| |||||||||||||||    
T  18436875 attcaacacattaaaataacaaaaagtaactttt 18436842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 18447733 - 18447700
Alignment:
Q  191 attcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||||||||| |||||||||||||||    
T  18447733 attcaacacattaaaataacaaaaagtaactttt 18447700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 18452826 - 18452793
Alignment:
Q  191 attcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||||||||| |||||||||||||||    
T  18452826 attcaacacattaaaataacaaaaagtaactttt 18452793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 43767273 - 43767359
Alignment:
Q  138 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  43767273 ttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacacattaaaacatcaaaaagtaattttt 43767359  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 24487725 - 24487804
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||||||||||||||||||||||| || ||| || |||||| ||||||| |||||||| ||||||||    
T  24487725 acttgataagagttttaaaatggaaattttgtcttgacatatgttcactcaacatattaaaacatcaaaaattaactttt 24487804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 53248614 - 53248676
Alignment:
Q  162 aaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| |||||||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  53248614 aaatggaaactttgtcttgaaatttgtatattcaacatattaaaaaaccaaaaagtaactttt 53248676  T

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Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 47188417 - 47188488
Alignment:
Q  153 agagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  47188417 agagttttaaaatggaaattttgtcttaaaatttgtgaactcaacacattaaaatatcaaaaagtaactttt 47188488  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 30833450 - 30833494
Alignment:
Q  176 tcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaac 220  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||    
T  30833450 tcttgaaaattgtgcattcaacacattgaaataacaaaaagtaac 30833494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 39258866 - 39258931
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||| | |||||||||||| |||| ||| ||| ||| |||||||| ||||||||    
T  39258866 tttaaaatggaaattttattttgaaatttgtgtattc-acatattcaaacatcaaaaaataactttt 39258931  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 9784507 - 9784435
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagt 217  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  9784507 acttgataagaggtttaaaatagaaattttgtcttgaaatttgtgcattttacacattaaaacatcaaaaagt 9784435  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 40323848 - 40323927
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| || ||||||||||||| ||| |||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  40323848 acttgataataggtttaaaatggaaactttatcttgaaacttgtgtattgaacacattaaaacatcaaaaagtaactttt 40323927  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 41174424 - 41174346
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaacttt 223  Q
    |||||||||||   ||||| ||||| |||| ||||| || ||||||||| |||||||| |||||| |||||||||||||    
T  41174424 acttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaacttt 41174346  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 42644209 - 42644274
Alignment:
Q  159 ttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||| | ||| |||| |||| || | |||||||||| |||||||||||||||| ||||    
T  42644209 ttaaaatggaaactatgttttgacatttatgtagtcaacacattgaaatatcaaaaagtaattttt 42644274  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 10409760 - 10409681
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||| |||||||| |||| ||| |||||||| ||||| ||| |||||||||||| |||||||||||||||||    
T  10409760 acttgataagaggtttaaaatagaaactttatcttgaaacttgtgtatttaacacattaaaacatcaaaaagtaactttt 10409681  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 39900381 - 39900304
Alignment:
Q  147 ttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||| |||||||||||||   | ||||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  39900381 ttgataagaggtttaaaatggaaaaaatttcttgaaatttgtacattcaacacattaaaacatcaaaaagtaattttt 39900304  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 24585829 - 24585887
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaag 216  Q
    |||||||| |||||||| |||||||||||||  |||||||||||||||| |||||||||    
T  24585829 tttaaaatagaaattttatcttgaaatttgtttattcaacacattaaaacatcaaaaag 24585887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 29912129 - 29912207
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaacttt 223  Q
    |||||||||||  |||||| | |||||||| |||| ||||||||| ||||||| |||| ||| ||||||||| ||||||    
T  29912129 acttgataagaagtttaaagtagaaattttatcttaaaatttgtgtattcaactcattgaaacatcaaaaagcaacttt 29912207  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 42964770 - 42964854
Alignment:
Q  139 tagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||| |||||||||||  |||||| |||||||||| |||||  ||| ||| |||||||||||| ||| |||||||| ||||||||    
T  42964770 tagggcacttgataagaagtttaaagtggaaattttatcttgggatt-gtgtattcaacacattgaaacatcaaaaaataactttt 42964854  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 41570032 - 41570104
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagt 217  Q
    |||||||||||  |||||| | |||||||| |||||  |||| || |||||||||||| ||||||||||||||    
T  41570032 acttgataagaaatttaaagtagaaattttatcttgggatttatgtattcaacacattgaaatatcaaaaagt 41570104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 7859228 - 7859162
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| ||| |||||| ||||  || ||||| |||||||||||||||| || ||||||||||||||    
T  7859228 tttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaagtaactttt 7859162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 11766593 - 11766527
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||| ||||||||||  ||||||| |||||||||||| ||||| ||| | |||||||||| ||||    
T  11766593 tttaaagtggaaattttaccttgaaaattgtgcattcaagacattgaaacaacaaaaagtaattttt 11766527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 43291872 - 43291938
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||| |||||||| |||| |||||| || |||||| | ||| |||||||||||||||| ||||    
T  43291872 tttaaaatagaaattttatcttaaaatttttgtattcaagagattgaaatatcaaaaagtaattttt 43291938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 29107275 - 29107304
Alignment:
Q  195 aacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||||||||||||||||    
T  29107275 aacacattaaaatatcaaaaagtaactttt 29107304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 32615819 - 32615896
Alignment:
Q  138 ttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaa 215  Q
    |||||| |||||||||||  |||||| | |||||||| ||||| |||| ||| |||||||||||| ||| || |||||    
T  32615819 ttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaa 32615896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 44131109 - 44131032
Alignment:
Q  147 ttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||| || | |||  ||||||||||| ||||    
T  44131109 ttgataagaattttaaaatggaaattttgtcttggaatttatgcattcaacgcaatgaaacgtcaaaaagtaattttt 44131032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 23568113 - 23568038
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaac 220  Q
    |||||||||||  ||| ||||||||| ||| |||||||||||||  |||||| ||||| ||| |||||||||||||    
T  23568113 acttgataagaagttttaaatggaaactttatcttgaaatttgtatattcaatacattgaaaaatcaaaaagtaac 23568038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 27915209 - 27915288
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||  ||||||||||||  ||| |||| ||| ||||| |||||||||||| |||||| ||||| ||||||||    
T  27915209 acttgataagaaatttaaaatggaaggtttatcttaaaagttgtgtattcaacacattcaaatattaaaaactaactttt 27915288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 37626931 - 37627010
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||  ||||||| ||||  ||||||||| | |||||| |||||||||||| ||| || ||||||||||||||    
T  37626931 acttgataagaagtttaaaagggaagctttgtcttggattttgtgtattcaacacatttaaacattaaaaagtaactttt 37627010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 33881961 - 33881906
Alignment:
Q  167 gaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactt 222  Q
    |||||||| |||||||| ||||| |||||||||||| |||| | ||||||||||||    
T  33881961 gaaattttctcttgaaaattgtgtattcaacacattgaaattttaaaaagtaactt 33881906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 5497749 - 5497815
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||||||||||| |||| |||||| || ||| || ||| | ||| |||||||||||||||||    
T  5497749 tttaaaatggaaattttatcttaaaatttatgtatttaatacaatgaaacatcaaaaagtaactttt 5497815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 8753109 - 8753051
Alignment:
Q  167 gaaattttgtcttgaaatttgtgcattcaacacattaaaat-atcaaaaagtaactttt 224  Q
    |||| ||| |||| ||||||||| ||||||||||||||||| ||||||||| |||||||    
T  8753109 gaaactttatcttaaaatttgtgtattcaacacattaaaataatcaaaaagcaactttt 8753051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 11123441 - 11123523
Alignment:
Q  133 tatttttagggtacttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaa 215  Q
    |||||||| | ||||||||||||  |||||| || ||||||| || |  |||||||| |||||||| ||||||| ||||||||    
T  11123441 tatttttacgatacttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaacatcaaaaa 11123523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 43921200 - 43921134
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||| || |||  |||| || |||||||||||||||||| ||| | |||||||||||||||    
T  43921200 tttaaaatgggaactttaccttggaaattgtgcattcaacacattgaaagaacaaaaagtaactttt 43921134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 6334458 - 6334417
Alignment:
Q  183 atttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||| |||||||||||| |||||||||||| ||||||||    
T  6334458 atttgtgtattcaacacattgaaatatcaaaaaataactttt 6334417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 56128675 - 56128630
Alignment:
Q  179 tgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||| |||||||||||||||||| ||| | |||||||||||||||    
T  56128675 tgaaaattgtgcattcaacacattgaaacaacaaaaagtaactttt 56128630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 17897916 - 17897850
Alignment:
Q  158 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    ||||||||| ||||||| |||| ||| |||||||||||||| ||||||| | |||||||||| ||||    
T  17897916 tttaaaatgcaaattttatcttaaaaattgtgcattcaacatattaaaacaacaaaaagtaattttt 17897850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 11074623 - 11074544
Alignment:
Q  145 acttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaagtaactttt 224  Q
    |||||||||||  |||||| | |||||||| |||||  ||||||| |||||||||||| ||| || |||||| |||||||    
T  11074623 acttgataagaagtttaaagtagaaattttttcttgggatttgtgtattcaacacattgaaacataaaaaagcaactttt 11074544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 37426640 - 37426571
Alignment:
Q  147 ttgataagagttttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaatatcaaaaag 216  Q
    |||||||||  |||||||| ||||||||   |||  ||||||| |||||||||||| |||||||||||||    
T  37426640 ttgataagaagtttaaaatagaaattttactttgggatttgtgtattcaacacattgaaatatcaaaaag 37426571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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