View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_high_2 (Length: 482)
Name: NF5674_high_2
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 635866 - 636296
Alignment:
| Q |
19 |
gaacaacatcctaaattgtttaagttgacattttgatcataaagtgaccaatagactgcaataaccaattagaacatgcttctttcaatttttctatgaa |
118 |
Q |
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| T |
635866 |
gaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacatgcttctttcaatttttctatgaa |
635965 |
T |
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| Q |
119 |
gcacatgttgcctcttcctttactgtcattaatatgtaatagagatcagtcaaatttcgtgaagttcagnnnnnnnnnnnnnnnn--ctgcataattact |
216 |
Q |
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| T |
635966 |
gcacatgttgcctcttcctttactgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcagaaaaaacgaaaaaaaaaactgcataattact |
636065 |
T |
|
| Q |
217 |
tttttgtctctatcttcctactaagatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgtgaagcaagtgaagtactttaatg |
316 |
Q |
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| T |
636066 |
tttttgtctctatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgtggagcaagtgaagtactttaatg |
636165 |
T |
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| Q |
317 |
agcaatgctggtgtgagttaaaacttgagaagctaaagatgtgatgatacctacatatacagagataaattgaatatcaaatgttgtatatttaaaatat |
416 |
Q |
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| T |
636166 |
agcaatgctggtgtgagttaaaacttgagaagctaaagatgtgatgatacctacatatacagagataaattgaatatc-aatgttgtatatttaaaatat |
636264 |
T |
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| Q |
417 |
aattgttaattccattaaaataaacaaaatca |
448 |
Q |
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| T |
636265 |
aattgttaattccattaaaataaacaaaatca |
636296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 636305 - 636347
Alignment:
| Q |
440 |
acaaaatcatatagtacctatttcactgttaacatggcaaagc |
482 |
Q |
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| T |
636305 |
acaaaatcatatagtacctcttccactgttaacatggcaaagc |
636347 |
T |
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