View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_high_3 (Length: 478)
Name: NF5674_high_3
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 48580342 - 48580790
Alignment:
| Q |
20 |
ggaatatgatcaaaagtgtggtgactagcataagacaatgttgctctagctaaaaaataagaaatattgttggtttgccgcagaataaaatttaacctaa |
119 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| ||| |
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| T |
48580342 |
ggaatatgatcaaaagtgtggtgactaacataagacaatgttgctctagctaagaaataagaaatattgttggtttgccgttggataaaatttaacttaa |
48580441 |
T |
|
| Q |
120 |
agtttgatgaagagcaaaataattttctacaaacatttaaaatagcaccaaattctaacttgtgagtaagcttactcgtggtaccgtcaaccactggctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||| |
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| T |
48580442 |
agtttgatgaagagcaaaataattttctacaaacatttaaaatagcaccaaattctaacttgcgagtaagcttactcgaggtgccgtcaaccactagctt |
48580541 |
T |
|
| Q |
220 |
gatatctaatcctatcatcatcacttgagtgaaattcaaattcataaacaataagagtgcttgtcttaggctcaatacttccgcttcttgaggtgttggt |
319 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48580542 |
gaaatttaatcctatcatcatcacttgagtgaaattcaaattcataaacaataagagtgcttgtcttaggctcaatacttccgcttcttgaggtgttggt |
48580641 |
T |
|
| Q |
320 |
taactatttgtccacatggtttagacacaaatcaattcatctctttcgtctctaagacacataccggcactaaaacaattttttctttaaaacttgccgc |
419 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48580642 |
taactatttgtccacatggtttaaacacaaatcaattcacctctttcgtctctaagacacataccggcactaaaacaattttttctttaaaacttgcctc |
48580741 |
T |
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| Q |
420 |
atccacgttgctcttaactttgtctctccaccggaattgtccacctatg |
468 |
Q |
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| T |
48580742 |
atccacgttgctctcaactttgtctctccaccggaattgtccacctatg |
48580790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 3138215 - 3138062
Alignment:
| Q |
21 |
gaatatgatcaaaagtgtggtgactagcataagacaatgttgctctagctaaaaaataagaaatattgttggtttgccgcagaataaaatttaacctaaa |
120 |
Q |
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|||||| |||| |||| ||||||||| ||||||||||||||| |||| | | || | | | |||||||| ||| | |||||||| |||| ||||| |
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| T |
3138215 |
gaatataatcataagtttggtgactatcataagacaatgttgttctaaccgacaagtgggcgacattgttggcttgtcttcgaataaaacttaatctaaa |
3138116 |
T |
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| Q |
121 |
gtttgatgaagagcaaaataattttctacaaacatttaaaatagcaccaaattc |
174 |
Q |
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||||||| |||| ||| | |||| |||||||||||| |||| |||||||||| |
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| T |
3138115 |
gtttgataaagaaaaaattcatttcttacaaacatttagaataacaccaaattc |
3138062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 13119282 - 13119223
Alignment:
| Q |
21 |
gaatatgatcaaaagtgtggtgactagcataagacaatgttgctctagctaaaaaataag |
80 |
Q |
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|||||| |||||||||| ||| |||| || |||||||||||||| ||||||| ||||||| |
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| T |
13119282 |
gaatataatcaaaagtgcggtaactaacacaagacaatgttgctttagctaataaataag |
13119223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 12529422 - 12529365
Alignment:
| Q |
345 |
cacaaatcaattcatctctttcgtctctaagacacataccggcactaaaacaattttt |
402 |
Q |
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||||||| |||||| ||||||||| |||| ||||||| | ||||||||||||||||| |
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| T |
12529422 |
cacaaatgaattcacctctttcgtttctatcacacatagcagcactaaaacaattttt |
12529365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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