View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_high_4 (Length: 447)
Name: NF5674_high_4
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 6246077 - 6245660
Alignment:
| Q |
7 |
gtgagaagaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaagttattattga |
106 |
Q |
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| T |
6246077 |
gtgagaagaaggatcaaattggaaatttagatgtgaaaggttaaggggttgatttgttgaccattaaattggtcgttattatggggtaagttattattga |
6245978 |
T |
|
| Q |
107 |
ttaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaattattgttggt |
206 |
Q |
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| T |
6245977 |
ttaagccgccttataataccgttcaccattttttaatatgaaaatgaaaattctaacttcatgaagcatgtgtgtggatataaaacaaattattgttggt |
6245878 |
T |
|
| Q |
207 |
ccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgaataagcaagtatgtaatatgtaacttgtagttgttgctaaa |
306 |
Q |
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| T |
6245877 |
ccacatgggtgaattttgtactatggtttggtaagcaagtgtgtaattttctttaatgaataagcaagtatgtaatatgtaacttgtagttgttgctaaa |
6245778 |
T |
|
| Q |
307 |
ctcgatttaatctatcaaccnnnnnnnnnnnnntctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcattttatttatg |
406 |
Q |
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| T |
6245777 |
ctcgatttaatctatcaacc--aaaaaaaaaaatctagattaaatctgctaagggtatacagcttgcaaggttgaagttgactggtgcattttatttatg |
6245680 |
T |
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| Q |
407 |
tgcacgttttatagtgggta |
426 |
Q |
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| T |
6245679 |
tgcacgttttatagtgggta |
6245660 |
T |
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