View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_1 (Length: 579)
Name: NF5674_low_1
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 10 - 560
Target Start/End: Original strand, 25741286 - 25741836
Alignment:
| Q |
10 |
acatcatcattagtattaccccaacaaataagagacaaatttttaatactcaaaccacaaacaaaatccaaaccagcaacaattgactcaaaagaaacac |
109 |
Q |
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| T |
25741286 |
acatcctcattagtattaccccaacaaataagagacaaatttttaatactcaaaccacaaacaaaatccaaaccagcaacaattgactcaaaagaaacac |
25741385 |
T |
|
| Q |
110 |
ttttcatcatcacatgattattcacaccaccactatcaaataaaccaccccaacatagaacaaatccattcttttttctaataccacaagtgaaattttt |
209 |
Q |
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| T |
25741386 |
ttttcatcatcacatgattattcacaccaccactatcaaataaaccaccccaacatagaacaaatccattcttttttctaataccacaagtgaaattttt |
25741485 |
T |
|
| Q |
210 |
tcctaaagcaagacctgaaaaaactgaaccagaattcaaaggaacatttagcttaccagaatcattgttcttctcacctttacaaaccaaaactctatca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25741486 |
tcctaaagcaagacctgaaaaaactgaaccagaattcaaaggaacatttagcttaccagaatcattgttcttctcacctttacaaaccaaaactttatca |
25741585 |
T |
|
| Q |
310 |
agagttaaaccacaaacatgtgacacaccagcaaccaatgttgacattgataaattcccaaactgtttctgaatctctttttcaacaccctttttaccat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741586 |
agagttaaaccacaaacatgtgacacaccagcaaccaatgttgacattgataaattcccaaactgtttctgaatctctttttcaacaccctttttaccat |
25741685 |
T |
|
| Q |
410 |
ttacaccccaacaaaaaactttactattctccttcaatatcccacaacaaaaaccagtaccacaagtaatgcttcgaaaccgaaaattttcatcaggaga |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741686 |
ttacaccccaacaaaaaactttactattctccttcaatatcccacaacaaaaaccagtaccacaagtaatgcttcgaaaccgaaaattttcatcaggaga |
25741785 |
T |
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| Q |
510 |
aggaaacttgaatccattagtttcaccataacctctccagcaccttaccac |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25741786 |
aggaaacttgaatccattagtttcaccataacctctccaacaccttaccac |
25741836 |
T |
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