View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_11 (Length: 270)
Name: NF5674_low_11
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4176182 - 4175959
Alignment:
| Q |
1 |
ataagggggaaaaatgaataataattatgattatgataattaattattataatcagaaaatatcaagaacttctaaaataaaatgattgcaaagaggaca |
100 |
Q |
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| T |
4176182 |
ataagggggaaaaatgaataataattatgattatgataatta----ttataatcagaaaatatcaagaacttctaaaataaaatgattgcaaagaggaca |
4176087 |
T |
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| Q |
101 |
attccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgtccacatggtataaacgctgcacctttatccctcaccatacacacgcaa |
200 |
Q |
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| T |
4176086 |
attccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgtccacatggtataaacgctgcacctttatccctcaccatacacacgcaa |
4175987 |
T |
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| Q |
201 |
caattgtgttccaccttaacattactcc |
228 |
Q |
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| T |
4175986 |
caattgtgttccaccttaacattactcc |
4175959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 55518692 - 55518567
Alignment:
| Q |
53 |
tcagaaaatatcaagaacttctaaaataaaatgattgcaaagaggacaattccctctactaacccaaagctctcttgaacacatcctgcaaaacgtgtgt |
152 |
Q |
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| T |
55518692 |
tcagaaaatatcgagaatctcgagaatagaacgattacaaaggggacaatttcctcgattcaaccacagttcccttgaacacactctgcaaaaagtgtgt |
55518593 |
T |
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| Q |
153 |
ccacatggtataaacgctgcaccttt |
178 |
Q |
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| T |
55518592 |
ccacacggtatgaacgctgcaccttt |
55518567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 8902983 - 8902901
Alignment:
| Q |
120 |
agctctcttgaacacatcctgcaaaacgtgtgtccacatggtataaacgctgcacctttatccctcaccatacacacgcaaca |
202 |
Q |
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| T |
8902983 |
agctccctagaacaaaccctgcaaaaagtatgtccacatggaataaacgccgcacctttattcctccccatgcacacacaaca |
8902901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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