View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_13 (Length: 249)
Name: NF5674_low_13
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 37133997 - 37134229
Alignment:
| Q |
1 |
ctaagctcacggggacaaatgtttctatttttaacaaccatgagttcacnnnnnnnggtggattttaatctccatgacgctgtttattttcaaagattga |
100 |
Q |
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| T |
37133997 |
ctaagctcacagggacaaatgtttctatttttaacaaccatgagttaactttttttggtggattttaatctccatgacgctgtttattttcaaagattga |
37134096 |
T |
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| Q |
101 |
tatatttcaattaaaatgaatataaaatgactggattgagctaaacaattttccacaaccaaaacaaatagcaaacggtggacgcaaagaaaatattcca |
200 |
Q |
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| T |
37134097 |
tatatttcaattaaaatgaatataaaatgactggattgagctaaacaattttccacaaccaaaacaaatagcaaacggttgacgcaaagaaaatattcca |
37134196 |
T |
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| Q |
201 |
ttcttgtacatatatttgtatatatataactat |
233 |
Q |
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| T |
37134197 |
ttcttgtacatatatttgtatatatataactat |
37134229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 20267975 - 20268127
Alignment:
| Q |
12 |
gggacaaatgtttctatttttaacaaccatgagttcacnnnnnnnggtggattttaatctccatgacgctgtttattttcaaagattgatatatttcaat |
111 |
Q |
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| T |
20267975 |
gggacaaaagtttctatttcaaacaatcatgagttaacttttttgggtggattttaatctccatgacgctgtttattttcaaagattgatatattccaat |
20268074 |
T |
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| Q |
112 |
taaaatgaatataaaatgactggattgagctaaacaattttccacaaccaaaa |
164 |
Q |
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| T |
20268075 |
taaaatgaatataaaatgactggattgagctaaacaatttcccacaaccaaaa |
20268127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20268124 - 20268162
Alignment:
| Q |
190 |
aaaatattccattcttgtacatatatttgtatatatata |
228 |
Q |
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| T |
20268124 |
aaaatattccattcttgtacatatatttgtatatatata |
20268162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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