View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_14 (Length: 243)
Name: NF5674_low_14
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_14 |
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| [»] scaffold0445 (1 HSPs) |
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| [»] scaffold1827 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 6584991 - 6585074
Alignment:
| Q |
116 |
aagttaattatgataaatgatgaatatataataatttgataaagttaattgtaggtaaaattattaatttctttattccatttat |
200 |
Q |
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| T |
6584991 |
aagttaattatga-aaatgatgaatacataataatttgataaagttcatgataggtaaaattattattttctttattccatttat |
6585074 |
T |
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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 7583456 - 7583409
Alignment:
| Q |
151 |
ttgataaagttaattgtaggtaaaattattaatttctttattccattt |
198 |
Q |
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| T |
7583456 |
ttgataaagttaattgtaggtaaaattattattttctttattccattt |
7583409 |
T |
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Target: scaffold0445 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 7803 - 7737
Alignment:
| Q |
144 |
taataatttgataaagttaattgtaggtaaaattattaatttctttattccatttataaataacaaa |
210 |
Q |
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| T |
7803 |
taataattagataaagttaattgtaggtcaaactattattttctttattccatttataaataacaaa |
7737 |
T |
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Target: scaffold1827 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1827
Description:
Target: scaffold1827; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 1222 - 1268
Alignment:
| Q |
148 |
aatttgataaagttaattgtaggtaaaattattaatttctttattcc |
194 |
Q |
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| T |
1222 |
aatttgataaagttaattgtaggtaaaattattattttctttattcc |
1268 |
T |
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