View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_5 (Length: 424)
Name: NF5674_low_5
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 42289593 - 42289186
Alignment:
| Q |
1 |
atctaaagttaacttatcagatccaccaaatctcatattaaggttgctttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaat |
100 |
Q |
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| T |
42289593 |
atctaaagttaacttatcagatccaccaaatctcatattaagattgctttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaat |
42289494 |
T |
|
| Q |
101 |
ccatgaagatcgttgttgtcatgatcattttcaatacttgaacttctatttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctat |
200 |
Q |
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| T |
42289493 |
ccatgaagatcgttgttgtcatgatcattttcaatacttgaacttctatttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctat |
42289394 |
T |
|
| Q |
201 |
cacctgatttatgatcattattactacctttgttattgttggtagaattagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtg |
300 |
Q |
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| T |
42289393 |
cacctgatttatgatcattattactacctttgttattgttggtagaattagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtg |
42289294 |
T |
|
| Q |
301 |
aggactagacatgttttgaccatgttgcattgaattgacaaaaccaacttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttccttgg |
400 |
Q |
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| T |
42289293 |
aggactagacatgttttgaccatgttgcattgaattgacaaaaccaacttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttccttgg |
42289194 |
T |
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| Q |
401 |
ttactact |
408 |
Q |
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||||||| |
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| T |
42289193 |
gtactact |
42289186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 12801370 - 12801419
Alignment:
| Q |
251 |
gttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtg |
300 |
Q |
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||||||||||| |||| ||||||||||||||||||||| || |||||||| |
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| T |
12801370 |
gttgaaccaatttgagcagctttttgaagcaatgcagttgccgacatgtg |
12801419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 12777616 - 12777562
Alignment:
| Q |
250 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagga |
304 |
Q |
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||||| ||| || |||||||||||||||||||| ||||| || |||||||||||| |
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| T |
12777616 |
agttgcacccatttgagaagctttttgaagcaaagcagttgctgacatgtgagga |
12777562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 36990901 - 36990848
Alignment:
| Q |
250 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagg |
303 |
Q |
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||||| ||| || |||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
36990901 |
agttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgagg |
36990848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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