View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5674_low_6 (Length: 411)
Name: NF5674_low_6
Description: NF5674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5674_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 114 - 395
Target Start/End: Original strand, 2169521 - 2169801
Alignment:
| Q |
114 |
ttattacaatccttgttgttacaacttaatggtttggttgtgcggacgtcttatgtggaatctcaagttaaaactcgagttacaacattcttcttcacca |
213 |
Q |
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| T |
2169521 |
ttattacaatccttattgttacaacttaatggtttggttgtgcggacgtcttatgtggaatctcaagttaaaactcgagttacaacattcttcttcacca |
2169620 |
T |
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| Q |
214 |
tatgtgtgtttacttgaccaccgaccacttgaccaatagcnnnnnnnnttacaattctcatgttgattttgctaacagagaagattgtcatatataatgc |
313 |
Q |
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| T |
2169621 |
tatgtgtgtttacttgaccaccgaccacttgaccaatagcaaaaaaaattacaattctcatgttgattttgctaacagagaagattgtcatgtataatgc |
2169720 |
T |
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| Q |
314 |
cagttctcaagtttaccatgacattcctacatgtattgatcttttttatttttaataaaattatctagtccctttcctttat |
395 |
Q |
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| T |
2169721 |
cagttctcaagtttaccatgacattcctacatgtattgatc-tttttatgtttaataaaatgatctagtccctttcctttat |
2169801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2169374 - 2169492
Alignment:
| Q |
1 |
ttggtgcgaaaactatgtggttagaacctattttgtgtgttttattggcgtggtgaaggcgttacttgatgttatagatttgatcaaagaattgagttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169374 |
ttggtgcgaaaactatgtggttagaacctattttgtgtgttttattggcgtggtgaaggcgttacttgatgttatagatttgatcaaagaattgagttct |
2169473 |
T |
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| Q |
101 |
aagtatgatttaattatta |
119 |
Q |
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| T |
2169474 |
aagtatgatttaattatta |
2169492 |
T |
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