View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675-Insertion-3 (Length: 1020)
Name: NF5675-Insertion-3
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 715; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 10 - 991
Target Start/End: Original strand, 39089399 - 39090383
Alignment:
| Q |
10 |
gatcatgtatttttcttcagcatatatnnnnnnnnnnctcggaacctaattaatggttgatatatttgatgattgttacaggtttggatttggattgtgg |
109 |
Q |
| |
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| T |
39089399 |
gatcatgtatttttcgtcagcatatataaaaaaataactaggaacctaattaatggttgatatatttgatgattgttacaggtttggatttggattgtgg |
39089498 |
T |
|
| Q |
110 |
acctttccttgcacaacatacccaaaatgctgttaaaaaaggcctgttaaccgaaactgatgtaaatggtgctttggcaaacacacttacagtccaaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39089499 |
acctttccttgcacaacatacccaaaatgctgttaaaaaaggcctgttaaccgaaactgatgtaaatggtgctttggcaaacacacttacagtccaaatg |
39089598 |
T |
|
| Q |
210 |
aggttaggaatgtttgatggtgagccatcagctcaaccatatggcaaccttggtccaactgatgtgtgcactccaactcaccaagagctagctcttgatg |
309 |
Q |
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| T |
39089599 |
aggttaggaatgtttgatggtgagccatcagctcaaccatatggcaaccttggtccaactgatgtgtgcactccaactcaccaagagctagctcttgatg |
39089698 |
T |
|
| Q |
310 |
ctgcaagacaaggaattgtacttcttaagaacactggtccttctttgcctctctccacaaagaatcatcggactgtggcagtaattgggcctaattctaa |
409 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39089699 |
ctgcaagacaaggaattgtgcttcttaagaacactggtccttctttgcctctctccacaaagaatcatcagactgtggcagtaattgggcctaattctaa |
39089798 |
T |
|
| Q |
410 |
tgctactgtcaccatgatcggcaactatgctggtaggcccttgttttatgcaggcacatgggatataatttcgtaatgcagtgctaagnnnnnnnnnnnn |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39089799 |
tgctactgtcaccatgatcggcaactatgctggtaggcccttgttttatgcaggcacatgggatataatttcgtaatgcagtgctaagttttttcttttt |
39089898 |
T |
|
| Q |
510 |
aatgtttctcatcccaacgtttgtcagaacatgcattctgttcaaattgcataattcaatcgtgcaaaaatgggannnnnnnnnnnnnnngcacgtttag |
609 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
39089899 |
aatgtttctcatcccaacgtttttcagaacatgcattctgttcaaattacataattcaaacgtgcaaaaatggga---ttttttttttttgcacgtttag |
39089995 |
T |
|
| Q |
610 |
attgtgtgatccagacaaaacacatgtttcaagaaatgttgggaggggagaagagaagtcatcnnnnnnnnnnnnnnnnnnaggtattgcttgtggatac |
709 |
Q |
| |
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| T |
39089996 |
attgtgtaatccatacaaaacacatgtttcgagaaatgttgggaggggagaaaagaagtcatcttttcgtttttgttttttaggtattgcttgtggatac |
39090095 |
T |
|
| Q |
710 |
acaaatccactacaaggaatagggaaatatgcaaggactattcacgagcctggttgtgcgaatgtggcatgcaatgatgataaacaatttgggtcggctc |
809 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39090096 |
acaagtccactacaaggaatagggaaatatgcaaggactattcacgagcccggttgtgcgaatgtggcatgcaatgatgataaacaatttgggtcggctc |
39090195 |
T |
|
| Q |
810 |
taaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatggtagataggactggtttacttcttcctgg |
909 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39090196 |
taaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatggtagataggactggtttacttcttcctgg |
39090295 |
T |
|
| Q |
910 |
acatcaac-agaccttgtttc-aaggtagcggctgcctcgagag--cccacca-tttggtc-taatgtctggtggtcctatagatata |
991 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||| || |||| ||||||| ||||||||||||| |||||||||||| |
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| T |
39090296 |
acatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggtgggcctatagatata |
39090383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 83 - 365
Target Start/End: Complemental strand, 44715899 - 44715617
Alignment:
| Q |
83 |
tgttacaggtttggatttggattgtggacctttccttgcacaacatacccaaaatgctgttaaaaaaggcctgttaaccgaaactgatgtaaatggtgct |
182 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | | || || || |||| || |||||||| ||||||| ||| | ||||| ||| |||| |
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| T |
44715899 |
tgttacaggtttggatttggattgtgggcctttcctaggagtgcacacgcaggatgcggtgaaaaaaggtttgttaactgaagcagatgtgaataatgct |
44715800 |
T |
|
| Q |
183 |
ttggcaaacacacttacagtccaaatgaggttaggaatgtttgatggtgagccatcagctcaaccatatggcaaccttggtccaactgatgtgtgcactc |
282 |
Q |
| |
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| T |
44715799 |
ttggtgaatacattgaaggtgcaaatgagattagggatgtttgatggagagccatcagctcaagcttatggaagattaggccctaaagatgtgtgtaaac |
44715700 |
T |
|
| Q |
283 |
caactcaccaagagctagctcttgatgctgcaagacaaggaattgtacttcttaagaacactggtccttctttgcctctctcc |
365 |
Q |
| |
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|| |||| ||||||||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||| |||||||||||||| |
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| T |
44715699 |
cagctcatcaagagctagcccttgaagctgctagacaaggaattgtgcttctcaaaaacactggtcctactttgcctctctcc |
44715617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 931
Target Start/End: Complemental strand, 44715342 - 44715101
Alignment:
| Q |
691 |
aggtattgcttgtggatacacaaatccactacaaggaatagggaaatatgcaaggactattcacgagcctggttgtgcgaatgtggcatgcaatgatgat |
790 |
Q |
| |
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||||||||| |||||||| || | || ||||||||||||| | |||||| | |||||||| ||| |||||| | ||||| || || | |||||| |
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| T |
44715342 |
aggtattgcatgtggatataccagccccttacaaggaataggaagatatgctaaaactattcatcagcagggttgttcaaatgtagcttgtagagatgat |
44715243 |
T |
|
| Q |
791 |
aaacaatttgggtcggctctaaatgcagcccgtcaagcggatgctactgttctagtgatgggattggatcagtcaattgaggctgaaatggtagatagga |
890 |
Q |
| |
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||||||||||| | || || ||||||| ||||| || ||||| ||| || ||||||| || ||||| || || ||||| ||||||| || ||||||| |
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| T |
44715242 |
aaacaatttggacctgccctggatgcagctcgtcatgcagatgcaactattttagtgataggcttggaccaatccattgaagctgaaactgttgatagga |
44715143 |
T |
|
| Q |
891 |
ctggtttacttcttcctggacatcaac-agaccttgtttcaa |
931 |
Q |
| |
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|| | || ||| | ||||||||||||| ||| |||||||||| |
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| T |
44715142 |
ctagcttgcttttgcctggacatcaacaagatcttgtttcaa |
44715101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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