View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5675-Insertion-5 (Length: 934)

Name: NF5675-Insertion-5
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5675-Insertion-5
NF5675-Insertion-5
[»] chr3 (2 HSPs)
chr3 (8-864)||(3668383-3669242)
chr3 (884-927)||(3668317-3668360)


Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 8 - 864
Target Start/End: Complemental strand, 3669242 - 3668383
Alignment:
Q  8 gaattggtactggaagaatagtagcagcgaagtttatggaaccgaagaaaaacgttacaccgaaacgaaacggtgtcgttttcaaggaggagacaccgaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669242 gaattggtactggaagaatagtagcagcgaagtttatggaaccgaagaaaaacgttacaccgaaacgaaacggtgtcgttttcaaggaggagacaccgaa 3669143  T
Q  108 acgaaacggtgtcgtttcggatacgccgaaatctagggttaattggagaagagggatgagtttaggtccgatggagattgccgggaaagtgatggcactg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3669142 acgaaacggtgtcgtttcggatacgccgaaatctagggttaattggagaagagggatgagtttaggtccgatggagattgccgggaaagtgatggcaccg 3669043  T
Q  208 ccggcgatgacgattagtccggcgacggtgaatcggaggaagtcttgtttctggaaaccgcaggaaagttgtgaagtaatgccgtcggggattactccgg 307  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3669042 ccggcgatgacgattactccggcgacggtgaatcggaggaagtcttgtttctggaaaccgcaggaaagttgtgaagtaatgccgtcggggattactccgg 3668943  T
Q  308 cgacggtgaataggaggaaatcttgttttttgaaaccgcaagaaaattgtgaagaaaatcgaagaaaaacgatttgcaaaccgaatttgaatttgaattc 407  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3668942 cgacggtgaataggaggaaatcttgttttttgaaacctcaagaaagttgtgaagaaaatcgaagaaaaacgatttgcaaaccgaatttgaatttgaattc 3668843  T
Q  408 aaattcagttaattctgcggttggatcgattaagcgtgtgaagaagaaagatgaagaaattgctcaggttcaaccgaagaaactgtttgaaggtgaaaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3668842 aaattcagttaattctgcggttggatcgattaagcgtgtgaagaagaaagatgaagaaattgctcaggttcaaccgaagaagctgtttgaaggtgaaaaa 3668743  T
Q  508 tcagtgaagaaatcgttgaaacaaggtagaattgttgcaagcaggtataattccggtggtggt---ggtgatgcgaggaagagatcgttttcggagaata 604  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  3668742 tcagtgaagaaatcgttgaaacaaggtagaattgttgcaagccggtataattccggtggtggtggtggtgatgcgaggaaaagatcgttttcggagaata 3668643  T
Q  605 acaagtgtttagggagtggaattagggctaagaaaaggtgggagataccaattgaagaagtggatgtgtatggttttgtaatgttaccgaagatttcgac 704  Q
    | ||| |||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  3668642 ataagggtttagggagtgaaatcagggctaagaagagatgggagataccaattgaagaagtggatgtgagtggttttgttatgttaccgaagatttcgac 3668543  T
Q  705 gatgaggtttgttgatgagagtcctagagattctggtgctgttaaaagagttgctgaattgaatggaaaaagatcttacttttgtgatgaagatgaggag 804  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3668542 aatgaggtttgttgatgagagtcctagagattctggtgctgttaaaagagttgctgaattgaatggaaaaagatcttacttttgtgatgaagatgaggag 3668443  T
Q  805 gagagagtgacggtggaggaagaaggtggttctgtttgtcaggttttgaattttgctgaa 864  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3668442 gagagagtgatggtggaggaagaaggtggttctgtttgtcaggttttgaattttgctgaa 3668383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 884 - 927
Target Start/End: Complemental strand, 3668360 - 3668317
Alignment:
Q  884 atggtgaacaagggtaattgtggaaattggaattgatttgtttt 927  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3668360 atggtgaacaagggtaattgtggaaattggaattgatttgtttt 3668317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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