View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675-Insertion-7 (Length: 697)
Name: NF5675-Insertion-7
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675-Insertion-7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Original strand, 46503210 - 46503900
Alignment:
| Q |
7 |
agcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacatatctatatcttaaaaaac |
106 |
Q |
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| T |
46503210 |
agcaataagccaaacactctcttttgctcttgtttcttcctacatacaaaccaccttcttttctattttgtcatatgaacatatctatatcttaaaaaac |
46503309 |
T |
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| Q |
107 |
agtgattattatttagnnnnnnnacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccatgttactgaaatcatttg |
206 |
Q |
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| T |
46503310 |
agtgcttataatttatttttttaacaaagaatggcttcatcatctgaactaggcttggattgcaagccacatagctactccatgttactgaaatcatttg |
46503409 |
T |
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| Q |
207 |
gagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaacgtgagcttcctctctg |
306 |
Q |
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| T |
46503410 |
gagaacaaagtgatcaaagctacaaactcgaagaatttgtttctcgcttagaagaagaacgtctcaaaatcgatgctttcaaacgtgagcttcctctctg |
46503509 |
T |
|
| Q |
307 |
catgcaacttctcacaaacggtacactttcaaaccaccttttctttcttttatatgtaacaaactatttaattatttgtccgaggtctcaagagaccgag |
406 |
Q |
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| T |
46503510 |
catgcaacttctcacaaacggtacactttcaaaccaccttttctttcttttatatgtaacaaactatttaattatttgtccgaggtctcaagagaccgag |
46503609 |
T |
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| Q |
407 |
ttcaaatcttatttgacatatttgtaaaattgtcgttagtgtcactttaattaataatttttctcgtgcacaattttcagcgatggaagcatcgaagcag |
506 |
Q |
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| T |
46503610 |
ttcaaatcttatttgacatatttgtaaaattgtcgttagtgtcactttaattaataatttttctcgtgcacaattttcagcaatggaagcatcgaagcag |
46503709 |
T |
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| Q |
507 |
caacttcaagcgtttagatcgaatcaaggagcaaaaccaattctagaagagttcataccagtgaagcaattaacatcatcagaaacattggaaaagacaa |
606 |
Q |
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| T |
46503710 |
caacttcaagcgtttagatcgaatcaaggagcaaaaccaattctagaagagttcataccagtgaagcaattaacatcatcagaaacattggaaaagacaa |
46503809 |
T |
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| Q |
607 |
caaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagccaaacaagtgaattaggaacaaaacaacaacaaaa |
697 |
Q |
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| T |
46503810 |
caaataataatgtatgtgatatggcaaattggatgacaagtgcacaattatggagccaaacaagtgaattaggaacaaaacaacaacaaaa |
46503900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 1082627 - 1082590
Alignment:
| Q |
428 |
ttgtaaaattgtcgttagtgtcactttaattaataatt |
465 |
Q |
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| T |
1082627 |
ttgtaaaattgtcgttaatgtcactttaattaataatt |
1082590 |
T |
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