View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_high_1 (Length: 588)
Name: NF5675_high_1
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 4 - 581
Target Start/End: Original strand, 21378679 - 21379257
Alignment:
| Q |
4 |
tattatgtatataaatcaataccatttaaacnnnnnnn-tgttttcattttgttttataggaatggatcctccaacatgttagccattatcaaaagcatg |
102 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
21378679 |
tattatgtataaaaatcaataccatttaaacaaaaaaaatgttttcattttgttttataggaatggatcctccaacatgttatccattaacaaaagcatg |
21378778 |
T |
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| Q |
103 |
taaatatggtatggtttatggcgacggatccttctccgaaggatacttcagccgtgaacgactaaccataacaccaacagacgcaattgatggtttattt |
202 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
21378779 |
taaatatggtatggtttatggtgacggatccttctccgaaggatacttcagccgtgaacgactaacagtaacaccaacagacgcaattgatggtttcttt |
21378878 |
T |
|
| Q |
203 |
ctcggatgtgggcaaaacaaccaaggtctgttcggcatgtctgccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaa |
302 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378879 |
ctcggatgtggggaaaacaaccaaggtctgttcggcatgtctgccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaa |
21378978 |
T |
|
| Q |
303 |
aatacaacaaaattttctcttattgtcttccttctacttctagcgttgttggccacctcacatttggagctaccgataattataaggtggccaacaacac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378979 |
aatacaacaaaattttctcttattgtcttccttctacttccagcgttgttggccacctcacatttggagctaccgataattataaggtggccaacaacac |
21379078 |
T |
|
| Q |
403 |
cgttaaatacactcccttatccacaatctcacgtagtaattccttctacggtcttgaaatcgttggaatcagtattgccaaaaccaagctttcaatatca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21379079 |
cgttaaatacactcccttatccacaatctcacgtagtaattccttctacggtcttgacatcgttggaatcagtattgccaaaaccaagctttcaatatca |
21379178 |
T |
|
| Q |
503 |
tcctctattttctcctccggtggcgccatcattgactctggtaccgtcgttacacggctgccaccatctacctatgcta |
581 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21379179 |
tcctctattttctcctccggtggcgccattattgactctggtaccgtcattacacggctgccaccatctacctatgcta |
21379257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 245 - 581
Target Start/End: Original strand, 21405576 - 21405897
Alignment:
| Q |
245 |
gccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaaaatacaacaaaattttctcttattgtcttccttctacttcta |
344 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |||| |||||| ||||||||||| || || |||| |
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| T |
21405576 |
gccggcctattaggccttggtcgtcatccaatctctttcgtccaacaaacatctcaaaaataccaaaaaactttctcgtattgtcttccctccacatcta |
21405675 |
T |
|
| Q |
345 |
gcgttgttggccacctcacatttggagctaccgataattataaggtggccaacaacaccgttaaatacactcccttatccacaatctcacgtagtaattc |
444 |
Q |
| |
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||| |||||||||||||||||||| || ||||| ||||| ||| ||||||||| |||| ||||| |||| || || ||||| |
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| T |
21405676 |
gcggcgttggccacctcacatttggcgcctccgat---------------aacaagtacgtaaaatacacttccttctccactgtctcccggagcaattc |
21405760 |
T |
|
| Q |
445 |
cttctacggtcttgaaatcgttggaatcagtattgccaaaaccaagctttcaatatcatcctctattttctcctccggtggcgccatcattgactctggt |
544 |
Q |
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||||||||| ||||| || | |||||||| ||| |||||||||| |||| |||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
21405761 |
cttctacggccttgacattgccggaatcagcgttggtggaaccaagcttccaatctcatcctctattttctcctccggtggtgccattatcgactctggt |
21405860 |
T |
|
| Q |
545 |
accgtcgttacacggctgccaccatctacctatgcta |
581 |
Q |
| |
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||||| ||||||||||||| || || ||||||||| |
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|
| T |
21405861 |
accgttattacacggctgcctccgactgcctatgcta |
21405897 |
T |
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Back To:
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