View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_high_11 (Length: 232)
Name: NF5675_high_11
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 52887937 - 52887854
Alignment:
| Q |
15 |
gcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattgaag |
98 |
Q |
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| T |
52887937 |
gcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattgaag |
52887854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 52887791 - 52887749
Alignment:
| Q |
174 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagag |
216 |
Q |
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| T |
52887791 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagag |
52887749 |
T |
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