View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_high_2 (Length: 447)
Name: NF5675_high_2
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 235 - 439
Target Start/End: Original strand, 31074173 - 31074378
Alignment:
| Q |
235 |
ttcatgctacgaggcctaaatgcgcaattatttaataaataatttagcatgaatttatcattatttaccaagtctaaaaacagtannnnnnn-aatgtac |
333 |
Q |
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| T |
31074173 |
ttcatgctacgaggcctaaatgcgcaattatttaataaataatttagcatgaatttatcattatttaccaagtctaaaaacagtattttttttaatgtac |
31074272 |
T |
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| Q |
334 |
ttttatttgtttcaatctctataatttcttattcacaacaataaaactatatatattttgtttatttatcttttaatacaccaagtggattgttagtctt |
433 |
Q |
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| T |
31074273 |
ttttatttgtttcaatctctataatttcttattcacaacaataaaactatatatattttgtttatttatcttttaataccccaagtggattgttagtctt |
31074372 |
T |
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| Q |
434 |
catttc |
439 |
Q |
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|||||| |
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| T |
31074373 |
catttc |
31074378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 31073937 - 31074096
Alignment:
| Q |
1 |
tggatgctgatgtggcacataaatcttatgtacatgtcatgtatgcatgtcatgtggctttctgtttgccaccccaaacaaaatatattgaaacnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31073937 |
tggatgctgatgtggcacataaatcttatgtacatgtcatgtatgcatgtcatgtggctttctgtttgccaccccaaacaaaatatattgaaactttttt |
31074036 |
T |
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| Q |
101 |
nnnnaggaaaaaatatatggaaagatattgttaggaactaaaa-aatggaaattttctcc |
159 |
Q |
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| T |
31074037 |
ttttagggaaaaatatatggaaatatattgttaggaactaaaagaatggaaattttctcc |
31074096 |
T |
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