View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_high_3 (Length: 421)
Name: NF5675_high_3
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 69 - 411
Target Start/End: Complemental strand, 46503166 - 46502823
Alignment:
| Q |
69 |
tatataaaagggaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggttta |
168 |
Q |
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| T |
46503166 |
tatataaaagggaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggttta |
46503067 |
T |
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| Q |
169 |
tgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagtaagaaccaatggaaaacatagggctaaat |
268 |
Q |
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| T |
46503066 |
tgtgagagaaagagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagcaagaaccaatggaaaacatagggctaaat |
46502967 |
T |
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| Q |
269 |
agtctttttcatccttaaatgttaaat-agtacatacatatattaaaattacaaaatcatatgtaaatttgtctttgnnnnnnnnaagtcatttgaattc |
367 |
Q |
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| T |
46502966 |
agtctttttcatccttaaatgttaaataagtacatacatatattaaaattacaaaatcatatgtaaatttgtctttgttttttttaagtcatttgaattc |
46502867 |
T |
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| Q |
368 |
tcaagtcatgtgtttttagttagttagtttttgttatccctttg |
411 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
46502866 |
tcaagtcatgtgtttttagttggctagtttttgttatccctttg |
46502823 |
T |
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