View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_high_4 (Length: 387)
Name: NF5675_high_4
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 3669595 - 3669238
Alignment:
| Q |
14 |
taatcagattcttcttaaatcttgaaacctttctcccaaaagcacttaaataaaaaagcacttaaccatgaataacacaaacaacaacaacattcttctt |
113 |
Q |
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| T |
3669595 |
taatcagattcttcttaaatcttgaaacctttctcccaaaagcacttaaataaaaaagcacttaaccatgaataacacaaacaacaacaacattcttctt |
3669496 |
T |
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| Q |
114 |
cattccacacaggttcaagtgtggaacaacgcagcattcgacggtgaagattttgccatgaattcgtcttctgattccatcaaagagaatctaaacccat |
213 |
Q |
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| T |
3669495 |
cattccacacaggttcaagtgtggaacaacgcagcattcgatggtgaagatttcgccatgaattcatcttctgattccatcaaagagaatctaaacccat |
3669396 |
T |
|
| Q |
214 |
ccgcattcaacattgttccttcttcaaacaaaagaaccattgacgacgaaatcgcggaaattgaaagtgaaattaagcgattaacttcgaagctggaatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669395 |
ccgcattcaacattgttccttcttcaaacaaaagaactattgatgatgaaattgcggaaattgaaagtgaaattaagcgattaacttcgaagctggaatt |
3669296 |
T |
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| Q |
314 |
gcttcgtgttgaaaaagctgaaagaaaaatcgcttctgaaaagcgtgttagtggaatt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669295 |
gcttcgtgttgaaaaagctgaaagaaaaatcgcttctgaaaagcgtgttagtggaatt |
3669238 |
T |
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