View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5675_low_13 (Length: 231)
Name: NF5675_low_13
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 31073790 - 31073592
Alignment:
| Q |
14 |
aagggtaaaaacctaatccaggaaaaagaaaacaagaataataaaactatattaaagagtattatgagaatcgtcc----ctagatcttgtattagaaat |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31073790 |
aaggggaaaaacctaatccaggaaaaagaaaacaagaataataaaactatattaaagagtattatgagaatcgtccctagctagatcttgtattagaaat |
31073691 |
T |
|
| Q |
110 |
aaaacatatgtacgttctatttttattcannnnnnnnatatattttaggacgacttaagtaaaccttgattataaccaatatagtgcattgccatgagtg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31073690 |
aaaacatatgtacgttctatttttattcattttttttatatattttaggacgacttaagtaaaccttgat-------aatatagtgcattgccatgagtg |
31073598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University