View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5675_low_8 (Length: 316)

Name: NF5675_low_8
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5675_low_8
NF5675_low_8
[»] chr4 (3 HSPs)
chr4 (218-301)||(52791709-52791792)
chr4 (60-122)||(52791579-52791641)
chr4 (11-61)||(52791506-52791556)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 52791709 - 52791792
Alignment:
Q  218 tgactgagattataagctgcaaattataatcattcaaaagccaatgtattctagctgaagttgtttatcttcctatgaagtaaa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52791709 tgactgagattataagctgcaaattataatcattcaaaagccaatgtattctaggtgaagttgtttatcttcctatgaagtaaa 52791792  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 52791579 - 52791641
Alignment:
Q  60 attaggtatccagccagttgtctaaaacatatatcaatctacattgcatgagttctttactga 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52791579 attaggtatccagccagttgtctaaaacatatatcaatctacattgcatgagttctttactga 52791641  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 52791506 - 52791556
Alignment:
Q  11 cagagaaactcactgaaaccaacataccaacaccgtgactaggaccaacat 61  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52791506 cagagaaattcactgaaaccaacataccaacaccgtgactaggaccaacat 52791556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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