View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5675_low_9 (Length: 259)
Name: NF5675_low_9
Description: NF5675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5675_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 42121392 - 42121494
Alignment:
| Q |
40 |
aaaatcagtttgattggtgaactttcatagcaaacaggtaaagccagagacacaccaaataacctctgaaagaagagtcaatattcacaaaagattgtat |
139 |
Q |
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| T |
42121392 |
aaaatcagtttgattggtgaactttcatagtaaacaggtaaagccacggacataccaaataacctctgaaagaatattgaatattcacaaaagattgtat |
42121491 |
T |
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| Q |
140 |
att |
142 |
Q |
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| T |
42121492 |
att |
42121494 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 42121594 - 42121691
Alignment:
| Q |
162 |
ttacagtcttgttattatgattgtaacattataaagattcgttggtgcttccacccagcagcatatcacgattccacattgctacctctttgtactac |
259 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
42121594 |
ttacagtcttgttattatgatggtaacattataaagattcattggtgcttccatgcagcagcatatcacgattccaaattgctgcctctttgtactac |
42121691 |
T |
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